Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65580 668 / 0 FRA3 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) AT2G43900 617 / 0 Endonuclease/exonuclease/phosphatase family protein (.1) AT1G05630 599 / 0 AT5PTASE13, 5PTASE13 Endonuclease/exonuclease/phosphatase family protein (.1.2) AT2G31830 556 / 0 endonuclease/exonuclease/phosphatase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041607 [exp] 1163 / 0 AT1G65580 1398 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10008330 [exp] 557 / 0 AT2G43900 1477 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Lus10027073 [exp] 536 / 4e-177 AT2G43900 1455 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Lus10009510 [exp] 57 / 4e-08 AT3G50390 245 / 1e-75 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011699 [exp] 52 / 1e-06 AT3G50390 256 / 5e-80 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G079300 [exp] 817 / 0 AT1G65580 1475 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Potri.010G177400 [exp] 816 / 0 AT1G65580 1490 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Potri.017G006900 [exp] 615 / 0 AT1G05630 1508 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1.2) Potri.007G145100 [exp] 612 / 0 AT2G43900 1511 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Potri.012G134800 [exp] 43 / 0.0005 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10024113 pacid=23141581 polypeptide=Lus10024113 locus=Lus10024113.g ID=Lus10024113.BGIv1.0 annot-version=v1.0 ATGGATGACATCAACGACCTCTTTTTCTCCGGTCCTGCCCTCGACGACGATCACCACCACCTCCTCAGTCGCCGTCCGGATGTCAACACCGAAACCTCCT ACTCTTCCCCTAAAATCTTCGACCGCTACTTCTCCTCCTCTTCCGACGACGAGGCCGAGGGCGATTACTCACGCCCGTCCAATTCCTCTTCCATGGAAGC TACCAGCAAGCGTCTCGATTACATGATCCAGTTTCTTGACCGCAAGCTCTCTTCTGATAACGACCCCAACAACTGTTCACTCCCTCTTGACCTTGATGTC GGCAACAACAACAAGTCGCTCTCCTCATCTTCTTTAACGCCACTGCCGGAATTCGTCGGGAGAGGAGGCGGAACCGGGATATTCAGGCTTCCAGTTCGCG CCGCGCTTCATCCTTCTCGTCCTCCCAGTCTAGAGGTTAGGCCGCATCCTCTGAGGGAATCTCAGATTGGATGTTCCTTGCGGAACATTGTCACATCCAG CTCTCAGCTGTGGGCGGGGAAGGAAGACGGGGGCCTCCAGGTGTGGCAATTTCGCGATTTGTATGGAGGAACTGAGGATACGGCGCCGTTTCAAGAGTCT GCGGCCTCTGGATCTTGGGTTCTTTGTTTGGTGGCAGACGAAGGGAGTCGGGTTATTTGGAGTGGGCATAAGGATGGGAGGATCAGGTGCTGGAAAATGG ATTCGGTTTCCGATGGCTTCAAGGAATGTCTGTCATGGATTGCTCACCGAGGCCCTGTTCTCTCCATGGTTATTACTAGCTACGGGGACTTATGGTCTGG TTCGGAGAGTGGTGCTCTGAAGATATGGCCATGGGAAGCTATTGAAAAATCATTTTCTTATACACCGGAAGAAAGACATGTGGCTGCAATGTTGGTGGAG AGATCATATATTGACGTTCGGGGCCAATTCAATGTGAATGGGTTGTCGAATGGATTAATATCTGATGTCATGTACTTGCTATCTGACAATTTTAAGGGGA AAGTTTGGAGTGCTAGTTATCTGTCCTTTGCTCTATGGGATGCTCGTTCAAAGGAGTTACTAAAGTTGTTCAATATAGATGGCCAGTTAGAAAGAATGGA CATGGTATCTGGACAAGACTTTACTCTTGACGAAGATATCAAGGTGAAAATTGTTGCTGGATCCAAGAAAGATAAGGCACAAAGCTCATTTGGTTTCTTC CAGCGTTCGAGGAATGCTATAACTGATGCTGTTCGCCGAGTTGCTGCAAAAGGTGGATTTGGAGACGATCGCAGAACTGAGGCAATAACACTAACATCAG ACGGAATAATATGGACTGGCTGTACGAATGGAGCAATTGTACAGTGGGATGGGAATGGGAATCGTTTACAGGAAATTCAATATCATTTTGCTGCTGTTCG ATGCTTTTGCTCCTTTGGGTCACGTGTATGGGTAGGCTATATTAGTGGTATGATCCAGGTTTTTGACCTTGAGGGTAATCTGCTTGGAGAGTGGGTAGCT CACAGTAGTTTGGTGATTGAAATGACTGCGGCTTCTGGCTATGTTTTCTCATTGGCTAATCATGGTGGTATCCGGGGCTGGAATTCCATGGCTCCTGGTC CTCTTGATGGAATTCTGCGATCAGAATTGGCAGGAAAGGAATTCTTGTATACAAGAATAGAAAATTTGAAAATTTTGACTGGTACATGGAATGTAGCACA AGAAAGAGCTACTCGTGACTCACTTGTGGCCTGGCTAGGTTCTGCAGCAGCAGATGTTGGAATAGTTGTTGTTGGGTTGCAAGAGGTTGAAATGGGAGCT GGAGTCCTCGCAATGTCTGCAGCAAAAGAAACTGTAAGAAATCAAGTTTTTCTGTACAATAACTTCTTGTCTTCGTGTATTCTTGTTTCTTAG
AA sequence Show only first row Show all	>Lus10024113 pacid=23141581 polypeptide=Lus10024113 locus=Lus10024113.g ID=Lus10024113.BGIv1.0 annot-version=v1.0 MDDINDLFFSGPALDDDHHHLLSRRPDVNTETSYSSPKIFDRYFSSSSDDEAEGDYSRPSNSSSMEATSKRLDYMIQFLDRKLSSDNDPNNCSLPLDLDV GNNNKSLSSSSLTPLPEFVGRGGGTGIFRLPVRAALHPSRPPSLEVRPHPLRESQIGCSLRNIVTSSSQLWAGKEDGGLQVWQFRDLYGGTEDTAPFQES AASGSWVLCLVADEGSRVIWSGHKDGRIRCWKMDSVSDGFKECLSWIAHRGPVLSMVITSYGDLWSGSESGALKIWPWEAIEKSFSYTPEERHVAAMLVE RSYIDVRGQFNVNGLSNGLISDVMYLLSDNFKGKVWSASYLSFALWDARSKELLKLFNIDGQLERMDMVSGQDFTLDEDIKVKIVAGSKKDKAQSSFGFF QRSRNAITDAVRRVAAKGGFGDDRRTEAITLTSDGIIWTGCTNGAIVQWDGNGNRLQEIQYHFAAVRCFCSFGSRVWVGYISGMIQVFDLEGNLLGEWVA HSSLVIEMTAASGYVFSLANHGGIRGWNSMAPGPLDGILRSELAGKEFLYTRIENLKILTGTWNVAQERATRDSLVAWLGSAAADVGIVVVGLQEVEMGA GVLAMSAAKETVRNQVFLYNNFLSSCILVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10024113 [exp]	0	1
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001428 [exp]	4.0	0.9161
AT5G47490			RGPR-related (.1)		Lus10028946 [exp]	4.0	0.9330
AT5G11700			unknown protein		Lus10005497 [exp]	5.8	0.9158
AT5G47490			RGPR-related (.1)		Lus10007471 [exp]	6.0	0.9312
AT5G54200			Transducin/WD40 repeat-like su...		Lus10039934 [exp]	7.9	0.9254
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10036133 [exp]	9.8	0.9249
AT5G42940			RING/U-box superfamily protein...		Lus10010036 [exp]	10.1	0.8973
AT1G72560		PSD	PAUSED, ARM repeat superfamily...		Lus10015655 [exp]	12.0	0.9205
AT5G28350			Quinoprotein amine dehydrogena...		Lus10018824 [exp]	13.0	0.9196
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10002603 [exp]	13.6	0.9089

Compare expression of checked genes

Lus10024113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.