Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08680 115 / 9e-31 ATP synthase alpha/beta family protein (.1) AT5G08690 115 / 1e-30 ATP synthase alpha/beta family protein (.1) AT5G08670 114 / 1e-30 ATP synthase alpha/beta family protein (.1) ATCG00480 56 / 7e-10 ATCG00480.1, ATPB ATP synthase subunit beta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035264 [exp] 150 / 8e-44 AT5G08680 925 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10034631 [exp] 150 / 2e-43 AT5G08680 928 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10034632 [exp] 149 / 2e-43 AT5G08680 875 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10035263 [exp] 88 / 5e-21 AT5G08680 782 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10009173 [exp] 55 / 2e-09 ATCG00480 890 / 0.0 ATP synthase subunit beta (.1) Lus10032826 [exp] 50 / 2e-08 ATCG00480 219 / 2e-70 ATP synthase subunit beta (.1) Lus10025635 [exp] 41 / 0.0001 AT4G08180 1142 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G126600 [exp] 133 / 2e-37 AT5G08690 892 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.010G116600 [exp] 133 / 2e-37 AT5G08690 871 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.013G162800 [exp] 57 / 2e-10 ATCG00480 927 / 0.0 ATP synthase subunit beta (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0275 [flax] [poplar] HAS-barrel PF02874 [flax] [poplar] ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain
Representative CDS sequence Show only first row Show all	>Lus10024114 pacid=23141521 polypeptide=Lus10024114 locus=Lus10024114.g ID=Lus10024114.BGIv1.0 annot-version=v1.0 ATGCCCGCGGCTCCTGCACAATCGGTTTCGGTCACCACCGGCGGAAAGGGAGGAGGCAAGATCGTCGATGAGTTCATCGGGAGAGGTGCAATCAGGCAAG TCTATCAGGTGATTGGTGCCATCGTCGATGTCAGATTCGACGAGGGTTTGCCTCCGATCTTGACCGCTCTCGAGGTGCTGGATAACTCAATCTATCTTGT GCTTGAAGTCGCCCAACATTTGGGAGAGAACATGGTCAGGACCATGGCTATGGGTGGTACTGAAGGTTTGGTCAGAGGCCAACGCGTCCTCAACACTGGT TCTCCCATCACTGTAAGAGAGGATCTGGCGGTGATTGCCATCCGGGGATTTGCAGTAGCAGCAGTTAGGGAGTTGTTCGACACTATTGTTGCAATGAGAT GA
AA sequence Show only first row Show all	>Lus10024114 pacid=23141521 polypeptide=Lus10024114 locus=Lus10024114.g ID=Lus10024114.BGIv1.0 annot-version=v1.0 MPAAPAQSVSVTTGGKGGGKIVDEFIGRGAIRQVYQVIGAIVDVRFDEGLPPILTALEVLDNSIYLVLEVAQHLGENMVRTMAMGGTEGLVRGQRVLNTG SPITVREDLAVIAIRGFAVAAVRELFDTIVAMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08680			ATP synthase alpha/beta family...		Lus10024114 [exp]	0	1
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	6.2	0.7748
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10036713 [exp]	6.3	0.7499
					Lus10019215 [exp]	10.0	0.7746
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Lus10017819 [exp]	12.8	0.7399
AT3G49990			unknown protein		Lus10015447 [exp]	16.8	0.7621
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10040013 [exp]	20.5	0.7234
AT3G57570			ARM repeat superfamily protein...		Lus10026305 [exp]	23.0	0.6644
AT2G33640			DHHC-type zinc finger family p...		Lus10025157 [exp]	27.8	0.6996
AT5G04050			RNA-directed DNA polymerase (r...		Lus10036278 [exp]	29.4	0.7201
AT5G66550			Maf-like protein (.1)		Lus10040204 [exp]	29.6	0.7213

Compare expression of checked genes

Lus10024114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.