Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06120 1567 / 0 ARM repeat superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041603 [exp] 1922 / 0 AT5G06120 1654 / 0.0 ARM repeat superfamily protein (.1.2.3.4) Lus10022024 [exp] 49 / 4e-05 AT3G04490 1370 / 0.0 unknown protein Lus10042566 [exp] 48 / 5e-05 AT3G04490 1382 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G036100 [exp] 1664 / 0 AT5G06120 1817 / 0.0 ARM repeat superfamily protein (.1.2.3.4) Potri.003G189500 [exp] 1636 / 0 AT5G06120 1792 / 0.0 ARM repeat superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10024115 pacid=23141592 polypeptide=Lus10024115 locus=Lus10024115.g ID=Lus10024115.BGIv1.0 annot-version=v1.0 ATGGAGAGTTTGGCCCAACTGGAAGACCTATGTGATAAGCTGTACAATTCAAGGGATTCTGCTGAGCGGGCTCATGCTGAGAACACTCTGAAAATCTTTT CAGTCAACATAGATTACATTTCTCAGTGCCAATACATTCTGGATAATGCTTTATCGTCTTATGCGTTGATGCTCGCCAGTACAAGTTTGATGAATCAAAT TACCGAGCACAGCCTGTCTTTGCAACTCCGTCTTGACATCAGGAATTATCTAGTTAACTATTTGGCCACCCGAGGACCAAATTTGGAGCATTATGTGATT GCCTCATTGATTAGACTCCTATGTCGACTCACCAAATTTGGATGGTTTGATGATGATAGATTCAAAGAATTGGTAAAGGAGTCCACAAGCTTCTTGACCC AGGCAACTTCAGATCACTATGCAATTGGTTTGAAGATATTGAATCAGCTAGTTACTGAGATGAATGTGCATACTCCCGGGTTGCCATCAACGCATCATCG AAGAGTGGCTTCCTCATTTAGAGATCAATCACTGTTCCAAATATTCCAAATTTCTATAACATCTCTGCATCAACTGAAGAATGACGGTACTGCAAGTGAA TTACAAGAGTTGGCAATTTCACTTTCTCTTCAATGCTTGTCGTTTGATTTTGTTGGGACGTCCATTGATGAAAGCTCAGAGGAGTTTGGTACTGTCCAGA TTCCTTCGTCTTGGAGACCAGTTTTAGAAGATCCATCAACGTTGCAGATTTTCTTTGATTACTATGTGATTATGATCAGTAGGCCAAAGCTCTCGAAGCA AGCATTGGATTGTTTGGTTCGACTGGCTTCAGTGAGGCGCTCTTTATTTACAAATGATGTTGCCCGTTCTAGGTTCTTAGCACATTTAATGACGGGAACT AAGGAAATCCTACAGATGGGGACAGGTCTTTCTGATCATGACAATTACCATGAGTATTGTCGGCTTCTTGGGCGGTTCAAAGTGAATTATCAGTTGTCAG AGCTGGTGAATGTGGAAGGTTATGGTGAATGGATACAGTTGGGGGCAGAGTTCGCGTTGAAGTCTTTACAGTCGAGGCAGATATGGGCCAGTAGCAGTGT GTACTACCTCATAGGGTTGTGGTCAAGATTGGTGGTGTCTGTGCCTTATCTGAAAGGTGACGCTCCAAGTTTGCTTGATGAATTTGTGCCTAAAATTACT GAAGGCTTTATTACATCAAGATTTAATTCGCTACAGGCTGGGCTGCATGACGATTCTTCAGAGAACTTGTTGGACAGTGTCGAATTTCTTCAAGATCAGC TGGAGTGTTTTCCTCACCTTTGCAGATTTCAGGAAAGAGCACGATTGCAGGCCACTAATAACAAAGAACTTGAAGTTATTGAGGCAAAGCTTTCTTGGCT TGTCCATATTATTGCTGCTATTTTGAAGATAAAACAAGCTGCACGCTCTAGCACGGAGTCTCAAGAAGTTCTTGATGCAGAGCTTTCAGCACGTGTTTTG CAATTGATAAGTGTCACCGATAGTGGACTGCATTGTCAGCGATATGGAGAATTGAGCAAGCAAAGGCTTGATCGAGCGATTCTTACGTTCTTCCAACATT TCCGTATGTCTTATGTGGGCGATCAGGCTGTGCATTCATCCAAGCAGTTATATGCTCGTCTATCTGAGCTTCTTGGACTTCATGATCATCTTTTGCTGTT GAATGTTATTGTTGGAAAAATTGCTACAAATTTGAAGTGCTATACCGAGAGTGAAGAGGTCATTAGTCATACATTAAGTTTGTTCCTTGAGTTAGCATCT GGATACATGACTGGGAAGCTGCTTCTGAAGTTGGATGCTGTGAAGTTCATCATCGCAAACCATACTAGGGACAACTTTCCTTTCCTTGAAGAACAGAGAT TTGGACGTAGCAGGACAAGTTTTCATTACACAATTGGCTGGCTGATATTCATGGAAGACAACCCTGTGAAATTTAAGGCTTCCATGGAACCACTTCTCAA GGTTTTTCTCAATTTGGAGTCAATTCCTGAACCAGCGTTTCGCACTGATGCTGTGAAATATGCTTTGATCGGCCTGATGAGAGACCTTAGAGGAATTGCA ATGGCGACTAGCAGTCGTAGAACATATGGATTCTTATTTGATTGGCTATATCCTGCTCACTTGCCCCTTCTCTTGAAAGGCATCTTGCATTGGGGAGATA CGCCAGAGGTCACTACGCCCATTCTAAAATTCATGGCCGAGTTTGTCTTAAACAAGGCCCAAAGATTAACATTCGACTCATCTTCTCCTAATGGCATTCT TCTTTTCCGAGAAGTCAGCAAGTTGATTGTTGCGTATGGTACAAGAATATTGGCACTTCCCAATCCTGCTGCTAGTTCTATGTATGACTACAAGTACAAG GGAATATGGATTTGTTTAACCATTCTCTCAAGAGCTCTTTCCGGAAATTATGTCAACTTTGGTGTCTTTGAACTGTATGGTGATAGAGCCCTCTCTGATG CTTTAGATATAGCTCTAAAGATGGCTCTTTCAATTCCTATGTCAGATATATTTGCATTTAGAAAGCTACAAAAGGCTTACTTCGGACTATTGGAGGGTCT GTTCAGCAGCCATTTATCTTTCATACTCAATCTTGATGCGAACACCTTCTTGCATCTTGTTGGTTCTCTTGAATCTGGTCTTAAAGGTCTTGATAGTCAC ATCTCAGCACAGTGTGCATCTGCTGTTGATAATTTGGCTGCTTTCTATTTCAACAACATCACAATGGGGGAGGCGCCCATACTACCTGCTGCAAACAATC TTGCTCGATACATTGCAGACTGCCCAACTTTGTTTCCAGGAATATTGAAGACCTTGTTTGAAATTGTTTTATTTGAGGACTGTGGCAACCAGTGGAGTCT TAGCCGACCTATGTTGAGCTTGATACTAATCAATGAGCAGATATTCTCTGATTTGAAGGCTCGGATTTTGGCAACACAGCCAGTGGATCAGCATCAGCGA CTCTCTCTTTGTTTTGACAAGCTTATGGCAGATGTTACACGCAGTTTGGGATGGGTTTTGGTTGGTTTGGAAAGGGGGAGTGGCCGTTCATGGTTGGTTT GTTACTCAGCTGGAATGTCAGGCGATTACTGTTCCATCCCTCGTCGGTGGGCGCCTCGCGCCTCCAGCTCCCTTCTCCTGCCATCTTCTTGGAGTGATTC GATGACGGCAGTTGCTGAGTCTTCTGGTGCTGATTAA
AA sequence Show only first row Show all	>Lus10024115 pacid=23141592 polypeptide=Lus10024115 locus=Lus10024115.g ID=Lus10024115.BGIv1.0 annot-version=v1.0 MESLAQLEDLCDKLYNSRDSAERAHAENTLKIFSVNIDYISQCQYILDNALSSYALMLASTSLMNQITEHSLSLQLRLDIRNYLVNYLATRGPNLEHYVI ASLIRLLCRLTKFGWFDDDRFKELVKESTSFLTQATSDHYAIGLKILNQLVTEMNVHTPGLPSTHHRRVASSFRDQSLFQIFQISITSLHQLKNDGTASE LQELAISLSLQCLSFDFVGTSIDESSEEFGTVQIPSSWRPVLEDPSTLQIFFDYYVIMISRPKLSKQALDCLVRLASVRRSLFTNDVARSRFLAHLMTGT KEILQMGTGLSDHDNYHEYCRLLGRFKVNYQLSELVNVEGYGEWIQLGAEFALKSLQSRQIWASSSVYYLIGLWSRLVVSVPYLKGDAPSLLDEFVPKIT EGFITSRFNSLQAGLHDDSSENLLDSVEFLQDQLECFPHLCRFQERARLQATNNKELEVIEAKLSWLVHIIAAILKIKQAARSSTESQEVLDAELSARVL QLISVTDSGLHCQRYGELSKQRLDRAILTFFQHFRMSYVGDQAVHSSKQLYARLSELLGLHDHLLLLNVIVGKIATNLKCYTESEEVISHTLSLFLELAS GYMTGKLLLKLDAVKFIIANHTRDNFPFLEEQRFGRSRTSFHYTIGWLIFMEDNPVKFKASMEPLLKVFLNLESIPEPAFRTDAVKYALIGLMRDLRGIA MATSSRRTYGFLFDWLYPAHLPLLLKGILHWGDTPEVTTPILKFMAEFVLNKAQRLTFDSSSPNGILLFREVSKLIVAYGTRILALPNPAASSMYDYKYK GIWICLTILSRALSGNYVNFGVFELYGDRALSDALDIALKMALSIPMSDIFAFRKLQKAYFGLLEGLFSSHLSFILNLDANTFLHLVGSLESGLKGLDSH ISAQCASAVDNLAAFYFNNITMGEAPILPAANNLARYIADCPTLFPGILKTLFEIVLFEDCGNQWSLSRPMLSLILINEQIFSDLKARILATQPVDQHQR LSLCFDKLMADVTRSLGWVLVGLERGSGRSWLVCYSAGMSGDYCSIPRRWAPRASSSLLLPSSWSDSMTAVAESSGAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06120			ARM repeat superfamily protein...		Lus10024115 [exp]	0	1
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10007999 [exp]	3.0	0.9185
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10018129 [exp]	3.7	0.9094
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017747 [exp]	3.9	0.9436
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019751 [exp]	7.3	0.9307
AT2G46560			transducin family protein / WD...		Lus10030236 [exp]	7.7	0.9287
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028092 [exp]	7.7	0.9316
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Lus10032842 [exp]	9.3	0.8829
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10041607 [exp]	10.3	0.8498
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10033549 [exp]	11.0	0.8941
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10024135 [exp]	12.6	0.9250

Compare expression of checked genes

Lus10024115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.