Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54360 491 / 1e-174 zinc ion binding (.1) AT1G06770 44 / 0.0002 DRIP1 DREB2A-interacting protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041603 [exp] 692 / 0 AT5G06120 1654 / 0.0 ARM repeat superfamily protein (.1.2.3.4) Lus10033860 [exp] 49 / 4e-06 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10014749 [exp] 48 / 1e-05 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G189400 [exp] 597 / 0 AT3G54360 481 / 1e-170 zinc ion binding (.1) Potri.001G036400 [exp] 583 / 0 AT3G54360 498 / 4e-177 zinc ion binding (.1) Potri.002G044100 [exp] 45 / 7e-05 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1) Potri.005G219000 [exp] 42 / 0.0004 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024116 pacid=23141518 polypeptide=Lus10024116 locus=Lus10024116.g ID=Lus10024116.BGIv1.0 annot-version=v1.0 ATGACCCCTGTCTGCCCATTTGTGAAAGCTGCACGTCCTGATGATGCATCGTCTAAGAAACAAGGGGAAGCTCAGAACAAACATGGGTCTGAGCATGAAG TGAAGGCAAAGAAAGATGTGGGCGATTCTGCCAGCGTCTCTCCTAAATGTCCCTTTGGATACGATTCCCAGACCTTTAAATTGGGCCCTCTTAGTTGCAT GATATGCCAAGCACTTCTGTTTGACTGTGCCAAGTGCATTCCTTGTTCTCACGTCTTTTGCAAAGTATGCGTCTCCCGCTTTAAGGACTGTCCTTTATGT GGAGCTGATATTGAGAAGATTGAAGCTGACACCAACCTTCAAAGTGTAGTTGATCGCTTTATTGATGGTCATGCTAGAATCAAGAGGTCTAATCTTGATT CAGATAAAGATGCAAATGCAGATACAAAGGTGACTTATGCGGATGTATCTTTGGAGAGAGGTGCTTTCCTGGTCCAGCAGGCTATGAGGGCATTTCGTGC TCAGAATGTGGAAAGTGCCAAGTCAAGACTCTGTGTATGTGTTGATGACATCCGGGGGCAGATTGAAACAATGGGCAACACAGACGAATTGTGCTCCCAG CTTGGAGCAGTTCTAGGAACACTCGGTGACTGCTGTCGGGCAACAGGGGATGCTACTTCTGCAATTGGTTATTTTGAAGAGAGTGTTGAATTCCTTTCAA AACTGCCCACGGAGAATCTGGAGATCACACACACTCTTTCTGTCTCTCTGAACAAAATTGGAGATCTGAAGTATTATGCTGGAGACATGGAAGCTGCAAG ATCTTACTATCTACGCTCACTTAATGTGCGTCGTGATACCATGAAACATCATCCTAAGGTTCCGTCCCAGACCGTAGATGTAGCTGTTTCCCTTGCAAAG GTTGCGGATGTCGATAGAAGCATAGGCAATGAAGACGCAGCAGGTGACAGGTTTCAAGAAGCCATTAAATTGTTGGAGTCCTTGACATTAAAACCCGAAG AAGTTGGTCTTGAGCAAAGGCGTTTGTCCGTACTAGAGTTTCTCAACAGCCAACAAGGGAAGGAGCAAGCTTCATGA
AA sequence Show only first row Show all	>Lus10024116 pacid=23141518 polypeptide=Lus10024116 locus=Lus10024116.g ID=Lus10024116.BGIv1.0 annot-version=v1.0 MTPVCPFVKAARPDDASSKKQGEAQNKHGSEHEVKAKKDVGDSASVSPKCPFGYDSQTFKLGPLSCMICQALLFDCAKCIPCSHVFCKVCVSRFKDCPLC GADIEKIEADTNLQSVVDRFIDGHARIKRSNLDSDKDANADTKVTYADVSLERGAFLVQQAMRAFRAQNVESAKSRLCVCVDDIRGQIETMGNTDELCSQ LGAVLGTLGDCCRATGDATSAIGYFEESVEFLSKLPTENLEITHTLSVSLNKIGDLKYYAGDMEAARSYYLRSLNVRRDTMKHHPKVPSQTVDVAVSLAK VADVDRSIGNEDAAGDRFQEAIKLLESLTLKPEEVGLEQRRLSVLEFLNSQQGKEQAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54360			zinc ion binding (.1)		Lus10024116 [exp]	0	1
AT3G52050			5'-3' exonuclease family prote...		Lus10025723 [exp]	3.5	0.7803
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10015612 [exp]	7.2	0.7371
AT4G33490			Eukaryotic aspartyl protease f...		Lus10033503 [exp]	12.2	0.7350
AT1G26180			unknown protein		Lus10031917 [exp]	19.0	0.7250
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10001196 [exp]	20.5	0.6962
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Lus10028120 [exp]	20.7	0.7353
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10039292 [exp]	22.3	0.7469
AT1G63610			unknown protein		Lus10016008 [exp]	22.8	0.7110
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10013838 [exp]	29.0	0.7057
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026378 [exp]	30.4	0.6775

Compare expression of checked genes

Lus10024116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.