Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05675 386 / 2e-130 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 384 / 2e-129 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT2G31790 357 / 7e-119 UDP-Glycosyltransferase superfamily protein (.1) AT2G43820 343 / 1e-113 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT2G31750 343 / 2e-113 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT2G43840 336 / 9e-111 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT1G24100 332 / 6e-109 UGT74B1 UDP-glucosyl transferase 74B1 (.1) AT4G15480 265 / 6e-83 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 259 / 2e-80 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT1G05530 256 / 6e-80 UGT75B2, UGT2 UDP-GLUCOSYL TRANSFERASE 2, UDP-glucosyl transferase 75B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024118 [exp] 490 / 9e-171 AT1G05675 375 / 2e-126 UDP-Glycosyltransferase superfamily protein (.1) Lus10039041 [exp] 421 / 6e-144 AT1G05675 343 / 3e-114 UDP-Glycosyltransferase superfamily protein (.1) Lus10010468 [exp] 408 / 9e-139 AT1G05675 368 / 7e-124 UDP-Glycosyltransferase superfamily protein (.1) Lus10008742 [exp] 406 / 7e-138 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10017825 [exp] 374 / 1e-125 AT2G43840 392 / 2e-133 UDP-glycosyltransferase 74 F1 (.1.2) Lus10006352 [exp] 372 / 1e-124 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10003809 [exp] 367 / 7e-123 AT1G05675 337 / 1e-111 UDP-Glycosyltransferase superfamily protein (.1) Lus10006353 [exp] 363 / 4e-121 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10010712 [exp] 357 / 9e-119 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G032300 [exp] 445 / 2e-153 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G032500 [exp] 438 / 1e-150 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032700 [exp] 436 / 8e-150 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032733 [exp] 436 / 8e-150 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.007G140300 [exp] 430 / 2e-147 AT1G05680 457 / 4e-159 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.001G389200 [exp] 420 / 2e-143 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.004G179300 [exp] 420 / 2e-143 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.014G175000 [exp] 382 / 6e-129 AT2G43840 411 / 8e-141 UDP-glycosyltransferase 74 F1 (.1.2) Potri.015G071900 [exp] 378 / 4e-127 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.007G140500 [exp] 366 / 2e-122 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10024117 pacid=23141602 polypeptide=Lus10024117 locus=Lus10024117.g ID=Lus10024117.BGIv1.0 annot-version=v1.0 ATGACAATCATAACAGTAGTGAAGCAGCAGCAGCAACAACAGGAACACAAGAACATCAATAATAATCCTCATGTGATGGTTCTTCCATTTCCATTCCAAG GACACATAAACCCCGCCCTCCAATTCTCAAAGCTCCTCATCTCCAAAGGACTCAATGTCACCCTCATCATCTCCTTGTCAGACCACACCAATAAAACCGA GCTAACCCAAGGCCAACTCGGTTCGGTCACCCTCCGCTTCCTTCGCAGCCAAGATATCAACTTGACCGACGAAGAGCAAGACCGATTAGGAGAGTTTGTT TTGCTGGAGAAGTTCAAGAGAACGGTGAAGAAGAAACTTCCGGAAGTGGTTTCGGAAATGAGGGAGAGTGGATCCCCTGTGGCGTGCCTCATCTATGACT CGGTGGTCCCATGGGCTCTGGGTATTGCCAAGGAGATGAATATACTGGGGGCTCCTTTCTTCACCATGCCTTGCGCTGTCGACACCATTTTTTATAACTA CCATCAGGGGGAGATTAAACTACGTCGTCCGATGGATGATAACGATAAGAAGGCCAAGATTCGTGTGGAAGGAATTGAGGAGGTGGAGCTTGAAATCCAG GACTTGCCTTCTTATCTGCACGATGACGTGGACGTCAACACCCCTCAGTCGTTGACGCTTTTGTCTGACCAGTTTTCCAACGTGGCAGATGCTGATTGGG TGTTTTGCAACACTTTCACTTCTCTTGAAGAAAAGATAGTAGAGTGGATGGGCAGTAAGCTGAAATTCAAGACGGTGGGACCCACTATCCCATCAATGTA CTTGGGCAAGCAGCAGCAGCAGCCGCATCACGACGACACCTTGGAGGACCATCACGAGTATGGGTTGAGCCTCTTCCAACCACAATCCCCAACTCGCCTC GTCAATTGGCTCAACTCCCAAACCCCCCAATCGGTCATCTACGTGTCATTCGGCAGCGTCGCCACGTTGTCCGACAAACAGACAGCGGAAGTAGCCGCCG CACTCGAGAACATCCACCGCCCTTTCCTCTGGATCGTCAGGAAATCCGAACAGGAAAAACTCCCGCCTGGTTTCTTCACATCCGACAAATCAGGGCTGGT GGTGTCATGGTGCAGCCAGCTGGAGGTGCTGGCCCACAAATCCACCGGATGCTTCGTGACGCATTGCGGGTGGAACTCGACGATCGAGGCGCTGAGTTTG GGAGTGCCGATGGTTGGGGTGCCGCAATTTGCGGATCAACCGACCAACGCCAAGTTTGTGGAAGACGTGTGGAAAGTTGGGGTTAAAGTGAAGAAATCGG AATTAGGGATAGTGAGGAAGGAGGAGATAGAGAAAAAGATATTTGAAGTGATGGAAGGGGAGAAGGCGAACGGTATTAGAATGAATGCTGAGAAATGGAA GAGTCTTGCTCAAGCTGCCGTTGCTAATGGAGGATCTTCTGACAATAATATTCAAGAGTTTGTAGCTCAACTCACCAATTGTCAACTGCTTCAAAGCTTT TAA
AA sequence Show only first row Show all	>Lus10024117 pacid=23141602 polypeptide=Lus10024117 locus=Lus10024117.g ID=Lus10024117.BGIv1.0 annot-version=v1.0 MTIITVVKQQQQQQEHKNINNNPHVMVLPFPFQGHINPALQFSKLLISKGLNVTLIISLSDHTNKTELTQGQLGSVTLRFLRSQDINLTDEEQDRLGEFV LLEKFKRTVKKKLPEVVSEMRESGSPVACLIYDSVVPWALGIAKEMNILGAPFFTMPCAVDTIFYNYHQGEIKLRRPMDDNDKKAKIRVEGIEEVELEIQ DLPSYLHDDVDVNTPQSLTLLSDQFSNVADADWVFCNTFTSLEEKIVEWMGSKLKFKTVGPTIPSMYLGKQQQQPHHDDTLEDHHEYGLSLFQPQSPTRL VNWLNSQTPQSVIYVSFGSVATLSDKQTAEVAAALENIHRPFLWIVRKSEQEKLPPGFFTSDKSGLVVSWCSQLEVLAHKSTGCFVTHCGWNSTIEALSL GVPMVGVPQFADQPTNAKFVEDVWKVGVKVKKSELGIVRKEEIEKKIFEVMEGEKANGIRMNAEKWKSLAQAAVANGGSSDNNIQEFVAQLTNCQLLQSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05675			UDP-Glycosyltransferase superf...		Lus10024117 [exp]	0	1
AT5G46090			Protein of unknown function (D...		Lus10013971 [exp]	34.6	0.6103
AT5G45030			Trypsin family protein (.1.2)		Lus10018312 [exp]	81.2	0.5598
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10005320 [exp]	82.9	0.5100
					Lus10021139 [exp]	121.5	0.5532
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Lus10034338 [exp]	126.7	0.5436
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10016365 [exp]	131.1	0.5401
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Lus10030588 [exp]	146.4	0.5319
AT1G21150			Mitochondrial transcription te...		Lus10039174 [exp]	147.5	0.5405
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10009549 [exp]	148.7	0.5014
AT4G30770			Putative membrane lipoprotein ...		Lus10037695 [exp]	151.7	0.5242

Compare expression of checked genes

Lus10024117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.