Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79460 478 / 4e-156 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G02780 207 / 7e-56 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 176 / 3e-45 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT4G16730 94 / 2e-19 AtTPS02 terpene synthase 02 (.1) AT4G16740 90 / 2e-18 ATTPS03 terpene synthase 03 (.1.2) AT3G25830 90 / 2e-18 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 90 / 2e-18 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT1G61680 86 / 6e-17 ATTPS14 terpene synthase 14 (.1.2) AT3G29410 85 / 9e-17 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G25810 85 / 9e-17 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005399 [exp] 1384 / 0 AT1G79460 515 / 1e-172 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10016598 [exp] 477 / 2e-155 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10014673 [exp] 465 / 3e-151 AT1G79460 650 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10029033 [exp] 457 / 4e-148 AT1G79460 662 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 443 / 1e-142 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034229 [exp] 441 / 9e-142 AT1G79460 583 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 418 / 2e-133 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004443 [exp] 414 / 3e-132 AT1G79460 564 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034232 [exp] 390 / 7e-121 AT1G79460 569 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082700 [exp] 558 / 0 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082400 [exp] 557 / 0 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 229 / 3e-63 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.005G210300 [exp] 215 / 2e-58 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.002G052100 [exp] 214 / 5e-58 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.007G118600 [exp] 135 / 5e-33 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.017G041700 [exp] 121 / 2e-28 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.011G031800 [exp] 111 / 4e-25 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308200 [exp] 108 / 2e-24 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.015G085500 [exp] 107 / 5e-24 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10024120 pacid=23141559 polypeptide=Lus10024120 locus=Lus10024120.g ID=Lus10024120.BGIv1.0 annot-version=v1.0 ATGGCCCTCACCAACGCCATCGCTCAGCCGACCCGCGCCGTCAATCTCCATGCTGACGTGGATGTCCTCCGTCCCAAGATTCGCTCTGGGAGGAACTCGC TCCTGAATCTCCAACATCGGGGGAAGGATGAGGGAAAGCGTGTGAGGAAGATGAAGGAGTTGCTGAGGAAGGAGGTGGAGATTTCGGCTTCCCCCTACGA CACAGCCTGGGTTTCCATGGTGGGTTGTGGCCAAACCGAGTCGGTAGCTCGGTTCCCGGAAAGCCTGAGATGGGTAATGGAGAATCAGCATGCTGACGGG TCATGGGCTTCCCATCCAACTGATCCACTCCTGGTCAAGGACTCCCTCTCGTCCACTCTCGCCTCTGTACTCGCTCTTCGTAGGTGGGGTGTCGGAGACC AACTCATTCATCGAGGATTGGAGTTCATAGGAGCTAACGCATGGGCAGCCAACGACAAGAACCAACGTACCCCAATTGGGTTCGATGTCACATTTCCTGG GATGATGGAGGCTGCCACCGCCATGGGACTCAACCTCCCAATCAACCCATCTTCCTTCCAACAAATGCTCCGCACGAGGGACCAACTTGTACACACCGGC GAGTTGGGGTTGGGGGAAGTGGCATATGCGGCGGAAGGGTTGACCATGGCCAAATTCAGCGGAGGGACGTGGAAATGGGAGGAGATGCTACGTAAGCACC AAAGAAAGAATGGATCTTTGTTCAATTCACCTTCTACAACGGCGGCTGCTCTTCTCCATCTCCACGACGACAAATCCTTGGCCTATTTGGACTCCATCCT CGCCACTTGCAACAACGCTCCTGCTGTTCCGACAGTTTACCCGATGGAGATATCGAGTCGGCTGGAGATGGTGGATAACCTCGTCAACCTCGGGATACAT CAATACTTCACACCCGAGATTACTTTCATTCTTGACGACATTTACAAATGCTGGATCCAGAGGGATGAGGAATTACTCTCAGATATTGGTTGTCTTGCCA AGTCATTTCGGCTCCTACGTTTGAACGGATATCATGTTTCCTCCGATGTATTCGAAGGATTGGACAGGGAAGAAGACTACTTGGAGAGCGTAAGCACACA ATATAAAAGCACTGAAACTGTATTGGAGCTATACAAAGCTTCACTCAACATAACTCTACTAAGCGAACCCATTCTCGACGGAATCAAGAGTTGGACAACC CCTTACCTCAGGAAAATTACCAAATCTCCACTGCACGATTCGGCCAAGGATTGGAAGCTGATTCAAGAGGTGGAGTATGCACTTAAGTATCCGTACGCAA GTTTGGAACGGATTGAAAATAGGCACAGCATTGAGATAGCCGACGTGGACAATACTAACGTCAGACTTCTTAAAACATCGTACAGGTGCTCAGACACAGA GGATAAAGAGTGGGTGGAGTTTGCTGTTGAAGATTATAACAGATGCCAGTCCGTACAAAGGAAAGAACTCGAGCTACTCGAAAAGTGGGTGAAAGACTAC AGAATAGAAGAGCTCGAGTTTGCGAGACAGAAGGTGGTATATGGTTTTTTTGCGGCGGGGGCCCCCACGCTCCTTCCTCGCCGCGCCCGCGTTTGTGGGT TCTTTGGGGAGAAAAAATCCCGGAGACAGAAGGTGGTATATGGTTTTTTTGCGGCGGCCGCCATACTGTTCCTTCCGGAGCACGCTGATGCTAGGAGTTC ATGGGCAAAGAACACTGTCCTTGTAACACTGGTTGATGATCTGTTTGATGTCGGCGGTTCTGAGGAAGAGCTTCTCAACTTTATTGAATTGGTTAAAGCA TGGGATGGACACAAGTCAGTAGGGTTCTGCTCCGAACAAGTGGAGATAGTTTTCAAGGCTGTTTACGAAACCACCAATGAGTATGTAGCAAAGGCCAGCC TAGTCCAAGGAAGATGTGTCAAAGACCACTTCATGGAAATGTGGCTTGTTCTGGTGGATTGCATGTGGGCAGAGTACGTCAGGGGAAGAGACAAGATAGT TCCAACAATGGAAGAATACATTGCCACAGGGTATGTAAGCGTTGCATTGGGACCCGTCATCTTGGTCCCAATGTACTTCCTCGGTTGCAAGCTATCCGAG GAAGCCATCAAGAGCAAAGAGTACGACGACTTGTTCATGCACGTTAGCGTTGTCGCCCGCCTCCTCAACGATCTCGCCACCATCGGGAGGGAGATGGAGC AAGGGAAAGAGAACGGGCTGGCGCTGGTGATGATGCAAGAGAATGGGAGGATGACAGAGGAAGAGGCAAGAAGGACGATACAGGAGATTATAGAGAAGCA CAGGAAGGAGCTGTTGAGGATGGTGGTTTTGAAACAAGTAGGGGATCAAGAGGGAAAGAGTACGGTGGGGAGAGAAGTGAAGGAAGTGTTTTGGCAGACG AGCAAAATAGTGCATATGTTCTACATGTCCAAAGATGGATTCTCTTCTCCTCATGAGATGATGGCTGCCATTGATTCCGTCATTTACACACCCATCGTTT TGCCTCATCAACAACGGGCTTTACCCGTGTACCCAGTGATACAGGGAATCAGAGTCTGGGTTTCATTTATGCCCCGTTTGGGTTCCGGGCTCGGATATTT TAAAACCCGGATGGTGAATCGGACAGGGAACGGAGTTCAAAATCCGGACCCGCCAGACCCATATGCTATGTCTAATGTTATGTTGTCCAAGGTTGGATCG AGTTGGTGA
AA sequence Show only first row Show all	>Lus10024120 pacid=23141559 polypeptide=Lus10024120 locus=Lus10024120.g ID=Lus10024120.BGIv1.0 annot-version=v1.0 MALTNAIAQPTRAVNLHADVDVLRPKIRSGRNSLLNLQHRGKDEGKRVRKMKELLRKEVEISASPYDTAWVSMVGCGQTESVARFPESLRWVMENQHADG SWASHPTDPLLVKDSLSSTLASVLALRRWGVGDQLIHRGLEFIGANAWAANDKNQRTPIGFDVTFPGMMEAATAMGLNLPINPSSFQQMLRTRDQLVHTG ELGLGEVAYAAEGLTMAKFSGGTWKWEEMLRKHQRKNGSLFNSPSTTAAALLHLHDDKSLAYLDSILATCNNAPAVPTVYPMEISSRLEMVDNLVNLGIH QYFTPEITFILDDIYKCWIQRDEELLSDIGCLAKSFRLLRLNGYHVSSDVFEGLDREEDYLESVSTQYKSTETVLELYKASLNITLLSEPILDGIKSWTT PYLRKITKSPLHDSAKDWKLIQEVEYALKYPYASLERIENRHSIEIADVDNTNVRLLKTSYRCSDTEDKEWVEFAVEDYNRCQSVQRKELELLEKWVKDY RIEELEFARQKVVYGFFAAGAPTLLPRRARVCGFFGEKKSRRQKVVYGFFAAAAILFLPEHADARSSWAKNTVLVTLVDDLFDVGGSEEELLNFIELVKA WDGHKSVGFCSEQVEIVFKAVYETTNEYVAKASLVQGRCVKDHFMEMWLVLVDCMWAEYVRGRDKIVPTMEEYIATGYVSVALGPVILVPMYFLGCKLSE EAIKSKEYDDLFMHVSVVARLLNDLATIGREMEQGKENGLALVMMQENGRMTEEEARRTIQEIIEKHRKELLRMVVLKQVGDQEGKSTVGREVKEVFWQT SKIVHMFYMSKDGFSSPHEMMAAIDSVIYTPIVLPHQQRALPVYPVIQGIRVWVSFMPRLGSGLGYFKTRMVNRTGNGVQNPDPPDPYAMSNVMLSKVGS SW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10024120 [exp]	0	1
					Lus10043316 [exp]	1.0	0.9953
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10022047 [exp]	2.0	0.9940
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10042593 [exp]	3.9	0.9894
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Lus10019461 [exp]	4.9	0.9939
AT1G17860			Kunitz family trypsin and prot...		Lus10026357 [exp]	5.9	0.9925
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10001322 [exp]	6.0	0.9933
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10030931 [exp]	6.6	0.9908
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10006984 [exp]	6.9	0.9925
AT1G17860			Kunitz family trypsin and prot...		Lus10039163 [exp]	7.1	0.9912
AT4G23690			Disease resistance-responsive ...		Lus10024715 [exp]	7.3	0.9888

Compare expression of checked genes

Lus10024120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.