Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005393 [exp] 915 / 0 ND / Lus10029057 [exp] 873 / 0 ND / Lus10005392 [exp] 639 / 0 ND / Lus10024122 [exp] 637 / 0 ND / Lus10038309 [exp] 406 / 3e-134 ND / Lus10022836 [exp] 391 / 1e-130 ND / Lus10023559 [exp] 289 / 9e-90 ND / Lus10006341 [exp] 275 / 1e-85 ND / Lus10008536 [exp] 256 / 6e-80 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G387900 [exp] 447 / 2e-150 ND / Potri.001G388801 [exp] 444 / 2e-149 ND / Potri.001G388450 [exp] 444 / 2e-149 ND / Potri.001G388200 [exp] 440 / 6e-148 ND / Potri.001G388600 [exp] 439 / 2e-147 ND / Potri.011G047300 [exp] 434 / 1e-145 ND / Potri.001G388100 [exp] 431 / 7e-145 ND / Potri.011G108300 [exp] 398 / 8e-132 ND / Potri.001G388900 [exp] 388 / 8e-128 ND / Potri.011G108200 [exp] 331 / 1e-105 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0122 [flax] [poplar] UTRA PF12143 [flax] [poplar] PPO1_KFDV Protein of unknown function (DUF_B2219) CL0205 [flax] [poplar] Di-copper PF00264 [flax] [poplar] Tyrosinase Common central domain of tyrosinase CL0205 [flax] [poplar] PF12142 [flax] [poplar] PPO1_DWL Polyphenol oxidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10024121 pacid=23141445 polypeptide=Lus10024121 locus=Lus10024121.g ID=Lus10024121.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTGAATGCACTCGTCTCTTCTTCACCTTCCACCAATGTTTACCGAAAGCCCTCCCAACTCTCCGCGCCCACTAAGAAGCCAAGTTTTACCC TCCACCCAACTCCAAACAAATCCCGACTCACTGTTACTTGCAAATCTTCATCATCAAGCAGCAGCAATGTTGACCCTATGATGAACGAAACAGCAGCATC CAGAAGAGATGTCCTCCTTGGTCTGGGAGCCGGTCTTTACGGAGCCTCTGCTCTAATCGATCCTTTCTCTGCAGCCTTTGCCAGACCCATTGACGGGCCT AGCATGGACGTGTGCAAGTTGGCAACAGCTACTCCCGGAAGTAGCATCGAGATCCAATGTTGCCCCCCAGCATTTGCCGGGAGGGAGTTCAAGAACTACC AGTTCCCAGACCCCTCCAAGCCAATGCGGATGAGAAGACCAGCTCATTTGGCAATGCAGGACAAGGTGTGGTTGGACAAATACAAGCTGGCAATGCAGAG GATGAAGTGCCTCCCTGCTGACGATCCACGTAGCTTCGTCCAGCAGGCCAGAGTTCACTGCGCTTACTGTAACGGCTCCTACGTCCAGGCCAACAACATT GAGAAAGGCCTACAAGTTCACTACTCGTGGTTCTTCCTCCCTTTCCATCGCATGTACCTCCACTTCTACGAGCGTATCTTGGGAAGTCTGATTGACGACC CAAGTTTCGCACTCCCCTTTTGGAACTGGGACCATGAAGACGGCATGGACATTCCTTCCATGTTCGTTGACCCGGAGTCCTCCATCTATGACGGCCTCCG CAACAAGAAGCATCTGCCCCCCAACAAGCCTATCGATCTGTATTGGGACCGAGAGGTCGAAAACAAGCCAACACCCGCAATTATCGAGGCCAACTATGCT ATGATCTATAACCGAATGGTCTCCGGCGCCAAGAGAAGGCTAGAGTTCTTCGGAGGCAAGTACCGCGCTAATCAGGACACACCTGATCGATCCACATCCG GACAAAGCGAGCTTCTCCACAACATGGCACATCTCTGGGTAGGCACCCCGCAACCTCGGGGTGGTACCGACTTAGGTGAAGACATGGGCAACTTCTACTC CGCTGGGAGGGACCCACTTTTCTACGTCCATCACGGCAACGTCGACAGGCTGTGGAATGTCTGGAAGACTATTGGACAATACCGCTTTGACTTTGATGAC TACGACTACCTCAACGCGTCTTTCCTCTTCTATGACGAGAACAAGGACCTTATTAAGATCAAGGTGAAGGACGTTTTGGACAACAAGCCCATGAAATTCG ACTATGAGGATAGGCCGCTTCCTTGGAGGAATGCTAGGCCGCCCCCTACCTCTGCCAATCAGGCTAGGACAGCTACCTCGAGCGTCTTTGGAAGAGACAA TGTTGCAGCCGCCAACGCGGCAACTGTGGGGCTCAAGGCGATTGACCCTTCGAAGCTGACATCACTGTCCTCATTCCCAGTGGAGCTGGACAAGGTGATT AGCGTGATGGTGCCAAGGCCCAAGACAGGGAGGACTGTGAGGGAGAAGGCTGCGACCAGCGAGATTCTGGTGGTGGAAGGGATCGAGATACAAGGAGACA GGGTTGTCAATTTTGATGTGGTGGTCAACGACGACCCAGACAACCCGAGTGGACCGTCGAGGGCGGAGTGGGCTGGCAACTTCCTCAACATTCCCCACGT GCATGAACACGGTGGCAAGAAGTTCGTCGCCGATCTTAGGATGGACATCACTGATCTGCTGGCGGATATTGGTGCTGAAAACGACACCGAGGTGCGAGTG ACTTTGGTGCCTAGGAACTCCGATGGTCCACTCTCGATTGCTGCGGTTAGGATTGAGCTCAGTTCTTAG
AA sequence Show only first row Show all	>Lus10024121 pacid=23141445 polypeptide=Lus10024121 locus=Lus10024121.g ID=Lus10024121.BGIv1.0 annot-version=v1.0 MASLNALVSSSPSTNVYRKPSQLSAPTKKPSFTLHPTPNKSRLTVTCKSSSSSSSNVDPMMNETAASRRDVLLGLGAGLYGASALIDPFSAAFARPIDGP SMDVCKLATATPGSSIEIQCCPPAFAGREFKNYQFPDPSKPMRMRRPAHLAMQDKVWLDKYKLAMQRMKCLPADDPRSFVQQARVHCAYCNGSYVQANNI EKGLQVHYSWFFLPFHRMYLHFYERILGSLIDDPSFALPFWNWDHEDGMDIPSMFVDPESSIYDGLRNKKHLPPNKPIDLYWDREVENKPTPAIIEANYA MIYNRMVSGAKRRLEFFGGKYRANQDTPDRSTSGQSELLHNMAHLWVGTPQPRGGTDLGEDMGNFYSAGRDPLFYVHHGNVDRLWNVWKTIGQYRFDFDD YDYLNASFLFYDENKDLIKIKVKDVLDNKPMKFDYEDRPLPWRNARPPPTSANQARTATSSVFGRDNVAAANAATVGLKAIDPSKLTSLSSFPVELDKVI SVMVPRPKTGRTVREKAATSEILVVEGIEIQGDRVVNFDVVVNDDPDNPSGPSRAEWAGNFLNIPHVHEHGGKKFVADLRMDITDLLADIGAENDTEVRV TLVPRNSDGPLSIAAVRIELSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024121 [exp]	0	1
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	1.0	0.9714
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10004331 [exp]	3.2	0.9557
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10002893 [exp]	4.7	0.9366
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	5.5	0.9526
AT5G19200		TSC10B	TSC10B, NAD(P)-binding Rossman...		Lus10010510 [exp]	5.5	0.9414
AT5G45580	GARP		Homeodomain-like superfamily p...		Lus10012142 [exp]	6.7	0.9294
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	6.9	0.9514
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10006317 [exp]	6.9	0.9413
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10031150 [exp]	7.5	0.9413
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	7.7	0.9450

Compare expression of checked genes

Lus10024121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.