Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005392 [exp] 1087 / 0 ND / Lus10024121 [exp] 615 / 0 ND / Lus10029057 [exp] 600 / 0 ND / Lus10005393 [exp] 525 / 0 ND / Lus10038309 [exp] 448 / 3e-151 ND / Lus10022836 [exp] 433 / 2e-147 ND / Lus10006341 [exp] 306 / 3e-98 ND / Lus10008536 [exp] 291 / 1e-93 ND / Lus10023559 [exp] 288 / 6e-90 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G047300 [exp] 485 / 8e-166 ND / Potri.001G388450 [exp] 463 / 2e-157 ND / Potri.001G388801 [exp] 463 / 2e-157 ND / Potri.001G387900 [exp] 458 / 1e-155 ND / Potri.001G388200 [exp] 458 / 2e-155 ND / Potri.001G388600 [exp] 456 / 1e-154 ND / Potri.001G388100 [exp] 446 / 1e-151 ND / Potri.011G108300 [exp] 419 / 1e-140 ND / Potri.001G388900 [exp] 410 / 6e-137 ND / Potri.011G108200 [exp] 350 / 2e-113 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0122 [flax] [poplar] UTRA PF12143 [flax] [poplar] PPO1_KFDV Protein of unknown function (DUF_B2219) CL0205 [flax] [poplar] Di-copper PF00264 [flax] [poplar] Tyrosinase Common central domain of tyrosinase CL0205 [flax] [poplar] PF12142 [flax] [poplar] PPO1_DWL Polyphenol oxidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10024122 pacid=23141491 polypeptide=Lus10024122 locus=Lus10024122.g ID=Lus10024122.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTCAGTAGTTTGATTTCAACTCCGTCGCCCAACACCACCGCCATTCACCCTAAAGCTTCTCAGCTTACCAAAGTCCCTACCCACCACATCG GCTCCCTCAGAAACAGATCACTCAACATTCTTACCTGCAACGCCAACAGTAGCCAAGAAAACAACCCAACCTCGCGGCGAGACCTCCTCCTCGGACTCGG CGGAGCCGCCGCAGCTGCCGCCACATTCACCGTGGACCCAACTTTTGCGAGGCCAATCTCGGGGCCCAGCATCGATACGTGCGTACTGGCTACCGCAAAT GATCTGAAAATTGCATGCTGCCCTCCTTCCTTCGCCGGGAAGGACATTGCCGACTTCCAGCTGCCCTCAGCCTCGGAGCCCCTCCGGATCCGAAGACCCG CGCACTTGGCCAGCCAGGACCCGGAGTTCGTGGCCAAGTACGAGAAGGCCATCAAGGCAATGAAGTGTCTCCCAGACGACGACCCACGTAGCTACATTCA GCAAGCCAGGGTCCACTGTGCCTACTGCAACGGCTCCTACGTCCAGGCCAACGACTCCAACAAAGGCTTGCAGGTTCACTTCTCTTGGCTCTTCCTCCCT TTCCACCGCTACTACATGTACTTCTACGAGCGCATCCTGGGAAAACTCATCGACGACCCGACATTCGCGCTCCCGTTTTGGAACTGGGACCACGAGGACG GCATGCCCATCGCCGACATGTTCCTGAAAGCCGAATCTCCTCTCCACGATCCGCTCCGTAACCCGGCCCACGTGACCCCTCCGTTTAACCTGCTGGACTT GGACTGGAACAAGGTTGACGTCGTGGGTCGGACCAAGGAGGAGCAGGTGCGGATCAACTACGCTGTGGTGTACAAGAATATGGTGTCGGGAGCCAAGAAG CGGTCTGAGTTCTTCGGGGCTAAGTACCGGGCTGGCGGCGACGTACCCGTGAGGGCTTCTTCTGGGTCTTGTGAGACTCTGCACAACCCGGCCCACATAT GGGTCGGAGATAGGAACAGGAAATTGGGTGAAGACATGGGCAATTTCTATTCCTCCGGGAGGGACCCACTGTTTTACGTGCATCATGGTAATGTTGACCG GATGTGGAACGTGTGGAAAGACATTGGCAAGTTTCGGTTTGACTTCGACGATTATGACTACTTGAACGCCTCGTTTCTGTTCTATGATGAGAATAAAAAC CCGGTTCGCGTCAAGGTTAAGGACTGCCTCGACAACAAGCTCATGAGGTACGATTACGAGGAGCGCCCACTCCCGTGGAGGAACTTCAAGCCAACTTCGG CGCCCGTCGCCAGACTTTTCGGAGGGGAGAAGGAGGCCAACGCATCACCGGCGGCGGTGGAGCTGACACCGCTGACTGAATTCCCTCTGGTGCTGACCAA GGCGACTAGCGTGTCTGTGGCAAGGCCGAAGAAGTCGAGGAGCGCCGCCGAGAAGGAAGCTAAGAGCGAGGTGCTGGTTGTGTACGGGGTCGAAATTGAT GGGGACAAGGTCGTCAAGTTTGATGTGGTGGTCAACGACGACCCCGCTTCCCCTAGTACTCCGGACAAGCTCCAGTACGCGGGAAGCTTCGTTAACGTCC CTCATGACGCCATGAAGTTCTCGAGCAATGTGAGGCTGGATATCACGGAGCTCGTTTCCGATATTGGAGCCGACGACGATGATGAGCTGGTGGTGACCCT GGTGCCTAGGATTACCGATGGGCCGATCTCGATTGCTGGGGTCAGGATTGAGCTCCAGGGGTCTTAG
AA sequence Show only first row Show all	>Lus10024122 pacid=23141491 polypeptide=Lus10024122 locus=Lus10024122.g ID=Lus10024122.BGIv1.0 annot-version=v1.0 MASLSSLISTPSPNTTAIHPKASQLTKVPTHHIGSLRNRSLNILTCNANSSQENNPTSRRDLLLGLGGAAAAAATFTVDPTFARPISGPSIDTCVLATAN DLKIACCPPSFAGKDIADFQLPSASEPLRIRRPAHLASQDPEFVAKYEKAIKAMKCLPDDDPRSYIQQARVHCAYCNGSYVQANDSNKGLQVHFSWLFLP FHRYYMYFYERILGKLIDDPTFALPFWNWDHEDGMPIADMFLKAESPLHDPLRNPAHVTPPFNLLDLDWNKVDVVGRTKEEQVRINYAVVYKNMVSGAKK RSEFFGAKYRAGGDVPVRASSGSCETLHNPAHIWVGDRNRKLGEDMGNFYSSGRDPLFYVHHGNVDRMWNVWKDIGKFRFDFDDYDYLNASFLFYDENKN PVRVKVKDCLDNKLMRYDYEERPLPWRNFKPTSAPVARLFGGEKEANASPAAVELTPLTEFPLVLTKATSVSVARPKKSRSAAEKEAKSEVLVVYGVEID GDKVVKFDVVVNDDPASPSTPDKLQYAGSFVNVPHDAMKFSSNVRLDITELVSDIGADDDDELVVTLVPRITDGPISIAGVRIELQGS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024122 [exp]	0	1
					Lus10005392 [exp]	1.0	0.9207
AT5G63900			Acyl-CoA N-acyltransferase wit...		Lus10000368 [exp]	4.2	0.9046
AT4G15620			Uncharacterised protein family...		Lus10031998 [exp]	6.0	0.8684
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10018359 [exp]	6.7	0.9028
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10039667 [exp]	7.1	0.8855
AT4G30400			RING/U-box superfamily protein...		Lus10008899 [exp]	7.9	0.8761
AT4G35170			Late embryogenesis abundant (L...		Lus10022644 [exp]	8.1	0.8776
					Lus10035486 [exp]	8.4	0.8676
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013335 [exp]	8.7	0.8857
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10035896 [exp]	9.5	0.8547

Compare expression of checked genes

Lus10024122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.