Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21240 801 / 0 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G51680 797 / 0 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT1G65060 677 / 0 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21230 647 / 0 4CL5 4-coumarate:CoA ligase 5 (.1) AT4G05160 376 / 1e-124 AMP-dependent synthetase and ligase family protein (.1) AT1G62940 343 / 9e-112 ACOS5 acyl-CoA synthetase 5 (.1) AT1G20510 336 / 6e-109 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT4G19010 336 / 1e-108 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 325 / 2e-104 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 325 / 2e-104 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005390 [exp] 1018 / 0 AT1G51680 827 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10026143 [exp] 951 / 0 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10008677 [exp] 926 / 0 AT1G51680 834 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10016135 [exp] 374 / 2e-123 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 374 / 2e-123 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 348 / 2e-113 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10025842 [exp] 346 / 2e-112 AT1G62940 793 / 0.0 acyl-CoA synthetase 5 (.1) Lus10026544 [exp] 341 / 1e-110 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10038259 [exp] 332 / 4e-107 AT1G62940 769 / 0.0 acyl-CoA synthetase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G036900 [exp] 815 / 0 AT3G21240 768 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.006G169700 [exp] 805 / 0 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.003G188500 [exp] 795 / 0 AT3G21240 741 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.018G094200 [exp] 784 / 0 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.019G049500 [exp] 696 / 0 AT1G65060 781 / 0.0 4-coumarate:CoA ligase 3 (.1.2) Potri.017G112800 [exp] 377 / 8e-125 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G055700 [exp] 377 / 2e-124 AT1G62940 786 / 0.0 acyl-CoA synthetase 5 (.1) Potri.004G102000 [exp] 375 / 4e-124 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 359 / 8e-118 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 346 / 1e-112 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10024123 pacid=23141607 polypeptide=Lus10024123 locus=Lus10024123.g ID=Lus10024123.BGIv1.0 annot-version=v1.0 ATGGAATCCAACCAGATTCAGCTGAACCATGCGACGCCGGAAAAGCAGGAGAAATTCATTTTCCGATCAAAATTGCCAGACATCGACATTCCCAACCACC TACCCCTCCATTCTTACATCTTCCAGAATATCTCCAACCACGCCTCCCGCCCCTGCCTTATCAATTCCCTCAACGGAGACATCTACACCTACGCCGATGT CCACTTGACCTCCCGCCGTGTCGCCGCCGGACTCAATAAACTAGGCGTCCGTCAGGGTGATGTGATTATGCTCCTCCTTCCTAACTGCCCCCAGTTCGTG CTCGCCTTCCTCGGCGCTTCTTTCAGGGGAGCCATTGCCACCGCCGCCAACCCTTTCTTCACCCCCGCCGAGATCTCCAAGCAGGCCAAGGCCTCCGGGG CTAAATTGGTCATTACGCAGTCCGCCTTCGCCGAAAAAGTCAAGGATCTCGCTAATTCGATCAAGGTCGTGTGTGTGGATTCAACTCCGTTCGATTGGTG CTTGCATTTCTCCGAATTGGCCGAGGCAGACGAAGCGGAGGCTCCGGAGGTGGAGATCAACCCGGACGACGTCGTAGCTCTGCCTTACTCGTCCGGGACC ACCGGATTGCCGAAAGGAGTGATGCTGACGCACAAGGGGCTGGTGACGAGCGTGGCGCAGCAGGTGGACGGAGAGAATCCGAATCTGTATTTCCACTCGG AGGATGTGATCCTCTGCGTGCTGCCGATGTTCCACATATACGCGCTGAACTCGATAATGCTTTGCGGTCTCCGGGTCGGGGCGGCGATCCTAATCATGCC CAAGTTCGACATCGGGTCCCTTCTAGAGCTGATCCAGAGGTACAGGATCACGATAGGGCCGATGGTGCCGCCGGTGGTGCTGTCGATCGCGAAGTCAACG GAGACGGAGAAGTACGACTTGTCGTCGATTAGGATGTTGAAGTCCGGCGCGGCGCCGTTGGGGAAGGAGCTGGAGGATGCCGTCAGAAACAAATTCCCAA ATGCCAGACTTGGCCAGGGATACGGAATGACAGAGGCAGGACCAGTGCTGTCAATGTGCTTGGCATTCGCCAAGGAACCATTCGAGATCAAAGCAGGTTC GTGTGGCACTGTTGTCAGGAATGCTGAGATGAAGATCGTCGACCCTGATACTGGATCCTCCCTTCCAAGAAACCAACCTGGAGAGATTTGCATCCGAGGC CACCAAATCATGAAGGGGTACCTGAATGACCCTGAATCCACATCAGCAACCATTGACAAACAAGGGTGGCTACACACAGGGGACATTGGCTACATTGATG ACGACGATGAGCTCTTCATTGTCGATAGGTTGAAGGAGATCATTAAGTACAAAGGGTTCCAGGTTGCTCCTGCTGAACTTGAAGCCTTACTTGTTGCACA CCCTCAGATCTCTGATGCAGCTGTTGTCGGGATGAAAGATGAGTCAGCAGGGGAAATCCCAGTTGCATTCGTGGTAAAAGCAGACAACTCTGAGCTCACA GAGGATGCAATCAAGCAGTACATCTCGAAACAGGTTGTGTTCTACAAGAGAATAGGAAGAGTGTTCTTCAGGGATTCTATCCCAAAGGCACCCTCCGGCA AAATATTGAGGAAGAATTTGAGAGCAGAGTTTGCCAATGGTTTAAAAAACTGA
AA sequence Show only first row Show all	>Lus10024123 pacid=23141607 polypeptide=Lus10024123 locus=Lus10024123.g ID=Lus10024123.BGIv1.0 annot-version=v1.0 MESNQIQLNHATPEKQEKFIFRSKLPDIDIPNHLPLHSYIFQNISNHASRPCLINSLNGDIYTYADVHLTSRRVAAGLNKLGVRQGDVIMLLLPNCPQFV LAFLGASFRGAIATAANPFFTPAEISKQAKASGAKLVITQSAFAEKVKDLANSIKVVCVDSTPFDWCLHFSELAEADEAEAPEVEINPDDVVALPYSSGT TGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFDIGSLLELIQRYRITIGPMVPPVVLSIAKST ETEKYDLSSIRMLKSGAAPLGKELEDAVRNKFPNARLGQGYGMTEAGPVLSMCLAFAKEPFEIKAGSCGTVVRNAEMKIVDPDTGSSLPRNQPGEICIRG HQIMKGYLNDPESTSATIDKQGWLHTGDIGYIDDDDELFIVDRLKEIIKYKGFQVAPAELEALLVAHPQISDAAVVGMKDESAGEIPVAFVVKADNSELT EDAIKQYISKQVVFYKRIGRVFFRDSIPKAPSGKILRKNLRAEFANGLKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Lus10024123 [exp]	0	1
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	2.0	0.9759
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10025754 [exp]	2.0	0.9704
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10000636 [exp]	2.4	0.9696
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Lus10035532 [exp]	4.8	0.9535
AT2G39518			Uncharacterised protein family...		Lus10040298 [exp]	4.9	0.9658
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10027864 [exp]	5.3	0.9685
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10010403 [exp]	7.6	0.9499
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10013611 [exp]	8.5	0.9635
AT1G43700	bZIP	SUE3, AtbZIP51,...	sulphate utilization efficienc...		Lus10018899 [exp]	10.0	0.9373
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10038913 [exp]	10.8	0.9579

Compare expression of checked genes

Lus10024123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.