Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07040 187 / 2e-61 RING/U-box superfamily protein (.1) AT3G61550 122 / 4e-35 RING/U-box superfamily protein (.1) AT5G06490 113 / 9e-32 RING/U-box superfamily protein (.1) AT2G35910 107 / 4e-29 RING/U-box superfamily protein (.1) AT5G53110 106 / 2e-27 RING/U-box superfamily protein (.1) AT2G46160 96 / 8e-25 RING/U-box superfamily protein (.1) AT2G25409 94 / 1e-24 unknown protein AT1G28040 97 / 2e-24 RING/U-box superfamily protein (.1) AT2G46495 97 / 4e-24 RING/U-box superfamily protein (.1) AT2G25410 93 / 1e-22 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005389 [exp] 279 / 1e-97 AT5G07040 154 / 9e-49 RING/U-box superfamily protein (.1) Lus10041079 [exp] 120 / 5e-34 AT3G61550 239 / 1e-80 RING/U-box superfamily protein (.1) Lus10003400 [exp] 117 / 7e-34 AT5G53110 152 / 3e-45 RING/U-box superfamily protein (.1) Lus10019018 [exp] 113 / 5e-30 AT5G53110 332 / 4e-112 RING/U-box superfamily protein (.1) Lus10012628 [exp] 108 / 5e-28 AT5G53110 284 / 5e-93 RING/U-box superfamily protein (.1) Lus10023086 [exp] 108 / 9e-28 AT5G53110 161 / 1e-59 RING/U-box superfamily protein (.1) Lus10032382 [exp] 107 / 1e-27 AT5G53110 237 / 1e-74 RING/U-box superfamily protein (.1) Lus10036404 [exp] 84 / 4e-21 AT3G61550 149 / 2e-46 RING/U-box superfamily protein (.1) Lus10010124 [exp] 75 / 8e-18 AT2G25409 86 / 1e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G192700 [exp] 192 / 8e-63 AT5G07040 194 / 3e-64 RING/U-box superfamily protein (.1) Potri.001G032300 [exp] 171 / 1e-54 AT5G07040 143 / 5e-44 RING/U-box superfamily protein (.1) Potri.002G165200 [exp] 122 / 3e-35 AT3G61550 204 / 5e-67 RING/U-box superfamily protein (.1) Potri.014G091000 [exp] 122 / 4e-35 AT3G61550 176 / 1e-55 RING/U-box superfamily protein (.1) Potri.010G243400 [exp] 114 / 1e-32 AT2G35910 152 / 4e-47 RING/U-box superfamily protein (.1) Potri.014G098200 [exp] 119 / 2e-32 AT2G46495 290 / 1e-95 RING/U-box superfamily protein (.1) Potri.016G067900 [exp] 114 / 3e-32 AT2G35910 129 / 7e-38 RING/U-box superfamily protein (.1) Potri.002G170300 [exp] 117 / 1e-31 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1) Potri.015G017800 [exp] 114 / 3e-30 AT5G53110 389 / 1e-134 RING/U-box superfamily protein (.1) Potri.012G011500 [exp] 112 / 2e-29 AT5G53110 353 / 2e-120 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024124 pacid=23141440 polypeptide=Lus10024124 locus=Lus10024124.g ID=Lus10024124.BGIv1.0 annot-version=v1.0 ATGTCCTCAGCCGAACCACCGGTGTCGGCTACCGGTGTCGGCCTCGGTTACGGAATCGCCATCGCCGTCAGCTTCCTCGTCCTCATCTCCACAATCATGC TCGCTTCTTACATCTGCGTGCGCCTCAAGATTAGTAGCAGCAGCAGCGGAAGCACCACCAGTCACCACTTGGACGACCAGGACGTTATCGTCCATAATTA CCGATACCAGCTCCACCACCAGCTCCGCCGCGACAACTCTTCCTCCGAACTGGCGCCGGAGGCTGTGGCTGGGCTGGATCCGACCGCAATCAACTCGCTG CCCAAGATTGTGGTGGGAGAGAGTAGGCGCATTCCCAGGCCCAACAACGGCCCATGTTCCATCTGCTTGGCTGACTACCGGGCTAATGACACGCTGCGCT GCATACCAGACTGCAACCACTGCTTCCATGCCGATTGCGTCGACGAGTGGCTCAGGGTGACCGCCACGTGTCCTTTGTGTCGGGTTTCGCCGGCTCCGAC TCCCGTGGCTTCTCCGTTGTCGGAGCTGGTGCCGTTGGCGGTTCATGTGGCTAGGTAA
AA sequence Show only first row Show all	>Lus10024124 pacid=23141440 polypeptide=Lus10024124 locus=Lus10024124.g ID=Lus10024124.BGIv1.0 annot-version=v1.0 MSSAEPPVSATGVGLGYGIAIAVSFLVLISTIMLASYICVRLKISSSSSGSTTSHHLDDQDVIVHNYRYQLHHQLRRDNSSSELAPEAVAGLDPTAINSL PKIVVGESRRIPRPNNGPCSICLADYRANDTLRCIPDCNHCFHADCVDEWLRVTATCPLCRVSPAPTPVASPLSELVPLAVHVAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07040			RING/U-box superfamily protein...		Lus10024124 [exp]	0	1
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10034522 [exp]	3.7	0.8432
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10000237 [exp]	13.0	0.8093
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10024388 [exp]	15.0	0.8348
AT2G36310		NSH1, URH1	nucleoside hydrolase 1, uridin...		Lus10003251 [exp]	41.2	0.7825
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10030515 [exp]	53.3	0.7952
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10027972 [exp]	62.5	0.7615
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10020647 [exp]	63.9	0.7514
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	72.1	0.7579
AT1G51940			protein kinase family protein ...		Lus10006841 [exp]	74.5	0.7658
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10034227 [exp]	75.5	0.7412

Compare expression of checked genes

Lus10024124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.