Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13650 522 / 0 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT1G07290 396 / 5e-137 GONST2 golgi nucleotide sugar transporter 2 (.1) AT4G32272 69 / 6e-13 Nucleotide/sugar transporter family protein (.1.2) AT1G21870 64 / 4e-11 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G77610 63 / 8e-11 EamA-like transporter family protein (.1) AT1G76340 59 / 2e-09 GONST3 golgi nucleotide sugar transporter 3 (.1) AT5G19980 57 / 7e-09 GONST4 golgi nucleotide sugar transporter 4 (.1) AT4G31600 46 / 3e-05 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005387 [exp] 574 / 0 AT2G13650 394 / 5e-138 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10005865 [exp] 397 / 3e-137 AT1G07290 521 / 0.0 golgi nucleotide sugar transporter 2 (.1) Lus10001205 [exp] 362 / 3e-123 AT1G07290 465 / 4e-164 golgi nucleotide sugar transporter 2 (.1) Lus10038090 [exp] 73 / 4e-14 AT4G32272 410 / 1e-144 Nucleotide/sugar transporter family protein (.1.2) Lus10025645 [exp] 64 / 5e-11 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1) Lus10029663 [exp] 62 / 5e-10 AT1G77610 547 / 0.0 EamA-like transporter family protein (.1) Lus10006645 [exp] 61 / 6e-10 AT4G32272 359 / 2e-123 Nucleotide/sugar transporter family protein (.1.2) Lus10042700 [exp] 61 / 6e-10 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10017759 [exp] 61 / 6e-10 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G062900 [exp] 605 / 0 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.007G106400 [exp] 605 / 0 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.009G044000 [exp] 410 / 2e-142 AT1G07290 472 / 5e-167 golgi nucleotide sugar transporter 2 (.1) Potri.018G127400 [exp] 83 / 2e-17 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2) Potri.018G026600 [exp] 76 / 5e-15 AT4G32272 493 / 2e-176 Nucleotide/sugar transporter family protein (.1.2) Potri.006G255400 [exp] 69 / 1e-12 AT4G32272 438 / 1e-154 Nucleotide/sugar transporter family protein (.1.2) Potri.005G177200 [exp] 60 / 8e-10 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.002G084500 [exp] 59 / 1e-09 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.010G057600 [exp] 59 / 3e-09 AT1G76340 557 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.008G177700 [exp] 57 / 6e-09 AT1G76340 540 / 0.0 golgi nucleotide sugar transporter 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024126 pacid=23141531 polypeptide=Lus10024126 locus=Lus10024126.g ID=Lus10024126.BGIv1.0 annot-version=v1.0 ATGGGTACAAGGTCTCTTTCCATCAAGTCTCCTGATTCTCATTACGAAAGAGATCTGGCGGAGGGAGTAGGTAATGCTAACCGAGGTGGAGGAAGCTTCA AAAATCATGAATCCAGTGTGGTTGTAGACCACCAGAGGTCCAGTCCACTGAGAAGAGAAGCAGTCAACAGGTCGCCATTTGCAATGAAGTTGCATGAAAA TGGAGAGATTGATTTGGAAGATGGAAAGCTGGAAAAGCCTGGAGATAAAGTTATACGCAGTAACAAAGTTACGATACGAAATCAGGCCTTATTATCTGGC CTTGCATATTGTATTTCCTCCTGCAGCATGATATTGGTCAACAAATTTGTCCTCTCCAGCTATAACTTCAATGCTGGTATATTTTTGATGTTGTACCAGA ATTTTATTTCAGTACTCATTGTATCCATGTTGAGCTTCCTGGGCCTAGTTTCAACAGAACCGCTAACATGGAGATTACTTAAAGTCTGGTTGCCGGTGAA TGTCATATTTGTTGGAATGCTCATCACAAGCATGTTTAGTTTGAAGTATATTAATGTTGCCATGGTTACAGTATTAAAGAATGTAACTAATGTTATTACT GCGGTTGGCGAGATGTATCTATTCCAGAAGCACCATGATAATAGAGTGTGGGCAGCTTTATTCTTAATGATCATTTCAGCAATATCTGGAGGGCTCACTG ATCTATCATTTCATGCCGTTGGCTATACATGGCAGATCCTAAACTGCTTTCTCACAGCATCGTATTCATTGACTCTACGTAGGGTGATGGACACTGCGAA GCACGTTACAAAATCGGGGAACTTGAACGAGTTCTCCATGGTCTTGCTCAACAACACACTTTCCTTGCCTCTAGGACTTGTTCTAATATTTGTATTCAAT GAGGTGGACTATCTCTCCACGACCCCTCTTTTGAGGTTACCTGGCTTCTGGTCAGTAATGACATTGAGTGGGTTCTTGGGTCTCGGCATCAGCTTCACTT CTATGTGGTTTCTTCACCAGACAGGAGCTACCACATATAGCCTTGTAGGCTCACTGAACAAGATTCCTCTATCAGTAGTGGGCATCCTATTGTTCAAAGT ACCCACAAGCTTGGAGAACTCTGCTAGCATCCTCTTCGGTTTGGTGGCTGGAGTATTTTTTGCCAGGGCAAAGATGCGTGAGAGATCCTAG
AA sequence Show only first row Show all	>Lus10024126 pacid=23141531 polypeptide=Lus10024126 locus=Lus10024126.g ID=Lus10024126.BGIv1.0 annot-version=v1.0 MGTRSLSIKSPDSHYERDLAEGVGNANRGGGSFKNHESSVVVDHQRSSPLRREAVNRSPFAMKLHENGEIDLEDGKLEKPGDKVIRSNKVTIRNQALLSG LAYCISSCSMILVNKFVLSSYNFNAGIFLMLYQNFISVLIVSMLSFLGLVSTEPLTWRLLKVWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVIT AVGEMYLFQKHHDNRVWAALFLMIISAISGGLTDLSFHAVGYTWQILNCFLTASYSLTLRRVMDTAKHVTKSGNLNEFSMVLLNNTLSLPLGLVLIFVFN EVDYLSTTPLLRLPGFWSVMTLSGFLGLGISFTSMWFLHQTGATTYSLVGSLNKIPLSVVGILLFKVPTSLENSASILFGLVAGVFFARAKMRERS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Lus10024126 [exp]	0	1
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10002826 [exp]	6.5	0.8964
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10000360 [exp]	8.1	0.8900
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10033124 [exp]	8.1	0.8884
AT3G51980			ARM repeat superfamily protein...		Lus10023269 [exp]	11.1	0.8954
AT4G18465			RNA helicase family protein (....		Lus10025127 [exp]	12.4	0.8862
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10006370 [exp]	14.5	0.8779
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10029168 [exp]	15.8	0.8821
AT2G04305			Magnesium transporter CorA-lik...		Lus10007098 [exp]	18.0	0.8780
AT5G56580		ANQ1, ATMKK6	ARABIDOPSIS THALIANA MAP KINAS...		Lus10034986 [exp]	19.1	0.8462
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026142 [exp]	21.7	0.8851

Compare expression of checked genes

Lus10024126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.