Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74320 483 / 1e-170 Protein kinase superfamily protein (.1) AT4G09760 439 / 3e-153 Protein kinase superfamily protein (.1.2.3) AT1G71697 429 / 3e-149 ATCK1 choline kinase 1 (.1) AT2G26830 166 / 5e-47 EMB1187 embryo defective 1187, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005386 [exp] 726 / 0 AT1G74320 426 / 1e-148 Protein kinase superfamily protein (.1) Lus10026145 [exp] 569 / 0 AT1G74320 499 / 6e-176 Protein kinase superfamily protein (.1) Lus10028728 [exp] 431 / 1e-149 AT4G09760 469 / 1e-166 Protein kinase superfamily protein (.1.2.3) Lus10028696 [exp] 426 / 4e-148 AT4G09760 464 / 8e-165 Protein kinase superfamily protein (.1.2.3) Lus10019424 [exp] 166 / 1e-44 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1) Lus10008675 [exp] 0 / 1 AT1G74320 91 / 2e-22 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G032000 [exp] 521 / 0 AT1G74320 531 / 0.0 Protein kinase superfamily protein (.1) Potri.003G193000 [exp] 519 / 0 AT1G74320 523 / 0.0 Protein kinase superfamily protein (.1) Potri.005G197500 [exp] 467 / 2e-163 AT4G09760 486 / 1e-172 Protein kinase superfamily protein (.1.2.3) Potri.002G063700 [exp] 462 / 2e-162 AT4G09760 481 / 2e-171 Protein kinase superfamily protein (.1.2.3) Potri.006G120700 [exp] 166 / 8e-47 AT2G26830 524 / 0.0 embryo defective 1187, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01633 [flax] [poplar] Choline_kinase Choline/ethanolamine kinase
Representative CDS sequence Show only first row Show all	>Lus10024127 pacid=23141503 polypeptide=Lus10024127 locus=Lus10024127.g ID=Lus10024127.BGIv1.0 annot-version=v1.0 ATGGGTGCCGGCAAGAAAGATGAACGGACGCCGGAAGAGCGTGTACCGGGAGAGGCGAAGGAGATGCTGAAATCGTTGGCATCAAGGTGGGAAGATGTGA CCGATGCGAACTCATTACAAATCATCCCTCTTAAAGGTGCTATGACCAACGAGGTCTTCCAAATCAAATGGCCAACCAAGGCCGGCGAACTCTCTCATAA AGTCATCGTTCGAATCTACGGGGTGGGCGTTGAGGTTTTCTTTGACAAAGACGATGAGATCCGCACATTTGAGCTCATGTCCAAACAAGGGCATGGGCCA CGTCTGCTCGGTCGCTTTTCTAGTGGCAGGATTGAAGAGTTCATTCGTGCTCGGACACTGTCAGCTTCTGATCTGTGTGATAAAGACATCTCCCTGCTTA TAGCAGCAAAAATGAGGGAGTTCCATAGCCTTGAGATGCCTGGTCAAAAAGTTGTCTACCTCTGGGATAAGCTGAGAAAGTGGCTGCAAGTAGCAAAAGA CACATGCTCTGCCGATGAAGCTAAAACATTTCGGTTGGATGAACTTGACGGTGAAATTACATTTCTCGAGAAGGAACTCTCCACCAACCAATACGTTGGG TTTTGCCACAATGATTTGCAGTATGGTAACCTAATGATTGATGAAGAAACCAAAGCAGTGACCATAATAGGCTACGAGTATGCAAGTTACAACCCAGTTG CCTTCGATTTGGCAAATCACTTTTGTGAGATGGCTGCGGACTATCACACAGAGACACCCCATGTATTGGATTATAGCAAATACCCTGGTGTGGAGGAGCG CAGAAGATTTGTGAATGCGTATCTGAGTTCTTCAGCGGAACCTCATGGTGGCAAAGAGGTGGAACCATTTCTTCAAGATGTTGAGAATTACACACTTGGG AGCCATCTGTTTTGGGGCTTATGGGGCATAATATCGGAACATGTTAACAAAATTGAGTTCGATTACTCGGCATACGCAAGACAACGACTTGACCAATACT GGCTTAAGAAGTCTACACTATTTGCTTCCTCAGCAAAAACCACTGCCACCATTACCCCTACTACTACTACTACTATCATTACTCCCACCACTGGTAAAGA GGCTGAAAGTGAAGTAGTAGCTGCAGACAAGCAGGAAGGCAAGGAATCATCGGTCTCAACGGAGAACGAAAAAGGAGCATCGGAGGAAAGCGCAGGGGCG AAGCAGCAAGCGTCGACCCAACAGGGGGTGTTCAGGAAGTTCAAGAGGTATTTGGGGTTCACCAATGTGTTTAGGAGGAACACTGGTACTAATCACAATA ATCCAGCAAAATCATCTGACCAGCCTCCGGCACATCCAGATGCCCCCGACGTCTCTTCCAAAACCACGCATGATTGA
AA sequence Show only first row Show all	>Lus10024127 pacid=23141503 polypeptide=Lus10024127 locus=Lus10024127.g ID=Lus10024127.BGIv1.0 annot-version=v1.0 MGAGKKDERTPEERVPGEAKEMLKSLASRWEDVTDANSLQIIPLKGAMTNEVFQIKWPTKAGELSHKVIVRIYGVGVEVFFDKDDEIRTFELMSKQGHGP RLLGRFSSGRIEEFIRARTLSASDLCDKDISLLIAAKMREFHSLEMPGQKVVYLWDKLRKWLQVAKDTCSADEAKTFRLDELDGEITFLEKELSTNQYVG FCHNDLQYGNLMIDEETKAVTIIGYEYASYNPVAFDLANHFCEMAADYHTETPHVLDYSKYPGVEERRRFVNAYLSSSAEPHGGKEVEPFLQDVENYTLG SHLFWGLWGIISEHVNKIEFDYSAYARQRLDQYWLKKSTLFASSAKTTATITPTTTTTIITPTTGKEAESEVVAADKQEGKESSVSTENEKGASEESAGA KQQASTQQGVFRKFKRYLGFTNVFRRNTGTNHNNPAKSSDQPPAHPDAPDVSSKTTHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74320			Protein kinase superfamily pro...		Lus10024127 [exp]	0	1
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031231 [exp]	5.2	0.7671
AT5G06210			RNA binding (RRM/RBD/RNP motif...		Lus10004224 [exp]	32.7	0.7100
					Lus10041183 [exp]	39.2	0.7458
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10001493 [exp]	48.8	0.7392
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040115 [exp]	67.5	0.7481
AT4G37280			MRG family protein (.1)		Lus10019312 [exp]	69.0	0.7240
AT1G30720			FAD-binding Berberine family p...		Lus10009639 [exp]	111.6	0.7050

Compare expression of checked genes

Lus10024127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.