Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G07410 941 / 0 PCN POPCORN, Transducin family protein / WD-40 repeat family protein (.1.2) AT1G27470 875 / 0 transducin family protein / WD-40 repeat family protein (.1) AT3G18130 51 / 2e-06 RACK1C_AT receptor for activated C kinase 1C (.1) AT1G48630 51 / 2e-06 RACK1B_AT receptor for activated C kinase 1B (.1) AT2G43770 48 / 2e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT1G18080 45 / 0.0002 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 43 / 0.0008 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005385 [exp] 1105 / 0 AT4G07410 704 / 0.0 POPCORN, Transducin family protein / WD-40 repeat family protein (.1.2) Lus10026770 [exp] 56 / 9e-08 AT5G21040 647 / 0.0 F-box protein 2 (.1.2) Lus10013988 [exp] 52 / 2e-06 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10008402 [exp] 51 / 3e-06 AT5G21040 658 / 0.0 F-box protein 2 (.1.2) Lus10002860 [exp] 50 / 4e-06 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 49 / 1e-05 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10020214 [exp] 49 / 2e-05 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10026837 [exp] 49 / 2e-05 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017569 [exp] 45 / 0.0001 AT1G18080 546 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G117500 [exp] 1088 / 0 AT4G07410 1053 / 0.0 POPCORN, Transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G014900 [exp] 1063 / 0 AT4G07410 1032 / 0.0 POPCORN, Transducin family protein / WD-40 repeat family protein (.1.2) Potri.009G157900 [exp] 58 / 2e-08 AT5G21040 670 / 0.0 F-box protein 2 (.1.2) Potri.012G052700 [exp] 47 / 3e-05 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 45 / 0.0001 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.T125206 [exp] 45 / 0.0002 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G197900 [exp] 45 / 0.0003 AT5G13480 760 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G026800 [exp] 45 / 0.0003 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10024128 pacid=23141590 polypeptide=Lus10024128 locus=Lus10024128.g ID=Lus10024128.BGIv1.0 annot-version=v1.0 ATGCCGAAGAACGTTTACAGGAATAGCTCACTCGCATGGAAGCCCTCTCCAGTTGTAGCCCTAGCTACCAGTGCCGATGACTCCCAAGTTGCCGCCGCTA GGGAGGATGGCTCCATGGAGATTTGGCTTGTCTCGCCTGGCTCAGTTGGGTGGCACTGCCAGCTGACAATTCATGGAGATTCTAGTTCGAGGGTTTCGTC GCTTGTGTGGTGTCGCACTGGCTCAGAGGGACTGCCTTGTGGTAGATTGTTCTCATCAAGCATTGATGGCTCTATATCAGAATGGGACCTCTTTCACTTG GAGCAGAAGATTGTTCTGGAGTCTATTGGCTTCTCAATTTGGCAGATGTCTGTTGCACCTCAATGTGCTTCACTGATTCATCCGGAGGTCATATCTCTGG ACTTGGGAAATGGCTTCTTGAATCACAGTCATAATGACGACCACGATGATGAATCAAGTGAAAGTGATAATGACTCGAGTTCTGATGAGCTTCACAATCC AGTTTCTGCAGATACACGCTTGGCTATTGCATGTGATGATGGTTGTGTGCGTCTATACACTATTCCTGAGTCAGATGAGTTGGTTTACAATAGAACATTG TCTAGGGTCAGTGGACGCACTTTGAGTGTGACATGGAGTTCGGATGCTACTAGGATTTTCTCAGGCAGCAGTGATGGTTTTGTTAGATGCTGGGATGCTT CACTTGGCCATGAGATATATCGGATAACAGTTGGGCTTGGTGGTCTGGGTGGTGGAACTGAAATTCGTGTGTGGTCTCTACTTGCGCTGAGATGTGGGAC ACTCGTTAGTGCAGACAGTACTGGAACCGTTCAGTTTTGGGACTCTCAGCATGGGACTTTACTGCAGGCACATTCGTATCATAAAGGTGATGTGAATGCT TTGGCAGTCGCTCCTAGTCACAACAGGGTATTCTCTGCTGGAGCAGATGGTCAGGTCATTCTCTATAAGCTTTCTGGTGAGATAGGATCTAGTGATGATA CATCTACATCCACGGTGATGAGGAGGTGGGTGTATGTGGGTTATGTCAGAGCTCATACACATGATATTAGAGCCTTGACAATGGCTGTACCGATCTGCCG TGAAGATGCACTATCTGAGGAAAAGGTGAAGAAAGACCGGAAGAGGAGGCGTCATGTTGAATTCAGCTATCACAAGTGGGCGCATTTAGGAGTTCCCATG CTTATATCTGCCAGTGATGACACAAAGTTGTTCGCGTATTCTGCGAAGGAGTTCTCTAAGTTCTCGCCGCATGATATTTGTCCTGCACCTCAGAGAATGC CTGTCCACTTGGTCCCTAATACAATCTCCAACAAGAACCCTTTACTTCTTGTCCAGGCATCTAGTACTTTGGATATTTTTCGTGTCCGCACAGAGGATGG AAACATCTCAGATATTGTTTCTGGTACATCAAAGGGCCTTGCAAAGACAGTTTTGAGGGCTCAAATAATATCTAAAAAGAAGATCATATGCAGCTGCATT AGCAATTCTGGAATGTTACTTGCTTACTCGGATCACAAGAAGTCTAATTTATTTGATTTGAAGATGCATGTTGACCCTAAAACACCATGGAAAGTTACCA AAAGGGAAGCTAGCGAAGAGGAAGCTTGCAAGGAGTTGCCATATGCACAATGTATGGCCTTTAGTTCGGATTCTTCAAGGCTAATATTGGCATGCCATAA CAGAAGGATATATATTGTGGATGTGGATAGCTTGAAAATAGTGCATACCTTCACACCCCAACGTCACGATTACAATGAAGAATCACCAACCAGTGAGCCG CCAGTGACAAAACTGTTTACTAGCAATGATGGGCAGTGGTTAGCTGCTGTTAATTGCTTTGGTGATATATATGTGTTCGACATGGAGACACAAAGGCAAC ATTGGTTCATCTCAAGACTAGATGGTGCCTCAGTTACTGCTGGAGGTTTCCCCCCACAGAATAGCAATGTGCTTGTAGTCACTACCTCCACGAACCAAGT CTATGCATTTGACGTGGAAGCAAAACAGTTAGGGGAATGGTCACAACGGAATTCATCTTTTTTGCCGAAGACGTACCAGGAGTTTCCTGGAGAAGTTATT GGTCTCTCTTTTCTGCCTTTATCAAACTCTACATCTGCCATCATATATAGTTCCAGGGCAATGTGTCTGATAGATTTTGGGATGCCAGTGGAAAGAGAGG AAGATAGTGGTTCACGATTAGTTAGATTAAAAAGCTCTGCAACCAACAAGGCTAGTCTGAAACGCACAAGAAAAGAGTATGAAACGAAGATTGAAAACAG GAAGAACTTCGAGTTTGTTCCTTTCAATAATCCAGTTTTATTTGTGGGACACCTTTCAGAGACCGGCATATTGATCTTAGACAAGCCATGGTTGAAGGTA GTTAAACTCTTAAAATCTGCTCCAGTGCACAGACATATATTTGGCACTTAA
AA sequence Show only first row Show all	>Lus10024128 pacid=23141590 polypeptide=Lus10024128 locus=Lus10024128.g ID=Lus10024128.BGIv1.0 annot-version=v1.0 MPKNVYRNSSLAWKPSPVVALATSADDSQVAAAREDGSMEIWLVSPGSVGWHCQLTIHGDSSSRVSSLVWCRTGSEGLPCGRLFSSSIDGSISEWDLFHL EQKIVLESIGFSIWQMSVAPQCASLIHPEVISLDLGNGFLNHSHNDDHDDESSESDNDSSSDELHNPVSADTRLAIACDDGCVRLYTIPESDELVYNRTL SRVSGRTLSVTWSSDATRIFSGSSDGFVRCWDASLGHEIYRITVGLGGLGGGTEIRVWSLLALRCGTLVSADSTGTVQFWDSQHGTLLQAHSYHKGDVNA LAVAPSHNRVFSAGADGQVILYKLSGEIGSSDDTSTSTVMRRWVYVGYVRAHTHDIRALTMAVPICREDALSEEKVKKDRKRRRHVEFSYHKWAHLGVPM LISASDDTKLFAYSAKEFSKFSPHDICPAPQRMPVHLVPNTISNKNPLLLVQASSTLDIFRVRTEDGNISDIVSGTSKGLAKTVLRAQIISKKKIICSCI SNSGMLLAYSDHKKSNLFDLKMHVDPKTPWKVTKREASEEEACKELPYAQCMAFSSDSSRLILACHNRRIYIVDVDSLKIVHTFTPQRHDYNEESPTSEP PVTKLFTSNDGQWLAAVNCFGDIYVFDMETQRQHWFISRLDGASVTAGGFPPQNSNVLVVTTSTNQVYAFDVEAKQLGEWSQRNSSFLPKTYQEFPGEVI GLSFLPLSNSTSAIIYSSRAMCLIDFGMPVEREEDSGSRLVRLKSSATNKASLKRTRKEYETKIENRKNFEFVPFNNPVLFVGHLSETGILILDKPWLKV VKLLKSAPVHRHIFGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10024128 [exp]	0	1
AT4G34910			P-loop containing nucleoside t...		Lus10015433 [exp]	2.4	0.9513
AT5G25757			RNA polymerase I-associated fa...		Lus10038622 [exp]	2.6	0.9596
AT1G31660			unknown protein		Lus10032891 [exp]	2.8	0.9566
AT3G11964			RNA binding;RNA binding (.1)		Lus10016216 [exp]	3.5	0.9584
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	3.9	0.9572
AT1G30240			unknown protein		Lus10014364 [exp]	4.7	0.9388
AT2G40360			Transducin/WD40 repeat-like su...		Lus10011471 [exp]	5.3	0.9488
AT2G18220			Noc2p family (.1)		Lus10027010 [exp]	6.3	0.9458
AT1G63810			unknown protein		Lus10026014 [exp]	6.3	0.9516
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004615 [exp]	7.7	0.8918

Compare expression of checked genes

Lus10024128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.