Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12320 80 / 7e-17 unknown protein AT5G06980 63 / 4e-11 unknown protein AT5G64170 57 / 8e-09 dentin sialophosphoprotein-related (.1.2) AT3G54500 45 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005384 [exp] 744 / 0 AT3G12320 79 / 1e-16 unknown protein Lus10008671 [exp] 360 / 7e-123 AT3G12320 65 / 1e-11 unknown protein Lus10026150 [exp] 335 / 3e-113 AT5G06980 66 / 4e-12 unknown protein Lus10015846 [exp] 54 / 1e-07 AT5G64170 225 / 8e-66 dentin sialophosphoprotein-related (.1.2) Lus10039553 [exp] 51 / 9e-07 AT3G54500 316 / 3e-98 unknown protein Lus10009319 [exp] 51 / 1e-06 AT1G01860 417 / 4e-137 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Lus10024170 [exp] 48 / 1e-05 AT3G54500 305 / 5e-94 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G031800 [exp] 185 / 9e-55 AT5G06980 75 / 7e-15 unknown protein Potri.003G193800 [exp] 168 / 2e-48 AT3G12320 66 / 5e-12 unknown protein Potri.001G205800 [exp] 64 / 7e-11 AT5G64170 334 / 6e-106 dentin sialophosphoprotein-related (.1.2) Potri.T126406 [exp] 60 / 8e-10 AT3G54500 191 / 6e-55 unknown protein Potri.T126606 [exp] 58 / 3e-09 AT3G54500 191 / 2e-56 unknown protein Potri.003G200600 [exp] 58 / 6e-09 AT3G54500 298 / 3e-93 unknown protein Potri.T127206 [exp] 58 / 6e-09 AT3G54500 355 / 2e-113 unknown protein Potri.001G025100 [exp] 56 / 2e-08 AT3G54500 325 / 4e-102 unknown protein Potri.T126906 [exp] 49 / 3e-06 AT3G54500 156 / 4e-41 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024129 pacid=23141526 polypeptide=Lus10024129 locus=Lus10024129.g ID=Lus10024129.BGIv1.0 annot-version=v1.0 ATGGCTAGCTACTTTAGATATGATGATCTTCTTGTTCCTAAAGATCAAGGAATGTCTTCTGATGAGTTTCAATCTCCGGATAGCTGGTCCAATTGGGGAC TAAACTCTACCAATAACTTTGACTTTTCAAGTAAGAACTTCCTTCCTGGTGCTAATCTGACTCCTCCACAACAACTCAGATTCGATAGTCAAACTTGTTG TAATCAGTCGGAGATGGAAGGTAGTGTCCTGGATAGAGATCAATCTAGTTGTTCCAGTTTCGGCGCAGGGCCAGTTCGGGAGGATTCCCATCAGCATACC ACCACTGCTATTTCTCCTCACCGCCCAGATTACCAGTCCAAGGGGCTTGCTGGGATCGAGAATATGGATGATCATGTCATGAACTCTTTGCTTGATGATC TTGAAGAAATGGAAAATCTTCAATCCTCGCCTTGCTTTTCATCAGAGTCACAGAATCGCTTGATTCCTGCTGATGAACTATGGACCGAAGCCACATTAGA TTCAGACTCCATATCTAGCAATGACTTTGCTACAGGAAGCTCTTGTCAACGGCCGCATTTTAGTCCATATCATATGGAGAGGAAAGGTCTTCAACAACTA AAGGTACCACCTTTTACTGTATCGGTATCATCTGAGGATGACTGCATGGATGTGGAAGCCCAGGACCAGAACGAACCATCTCGCGAAGAGTCAGCGCTAC ATGAGCTACAAATGGTGATGACACAGTTGACTACAAAGACCCGACTTTGCTTTCGTGACGCTCTGTACCGTTTGGCCAAAAGTTCAAGACCAAATGAAGT AGCATACAAAGAACTTGGCATGGATATTGCTTCGTCGAGGGTTTCAGAGGACAAACTTAGTTGTGGAGGCGATGAAATGGAACCACAGACAAACACCATC GACAGAACAATTGCAAACATGATGTTTAACAAGATGGACATAGATGTGATGGACTACCTCATCTCAACCCCAACTAGCTCCGACCAAGAATTCTTGCCAA ATGATAGCCACCTACAACACTTCACCTCTGTTCATCACAGCCAAATATTCCCCGGTGATGCTGAGGTTCCAGCTTCCAGCCACAGTACTTGGATCCATGA AGCAGCAGATGGGGGCATGCAAGTATCAGGAACTGTTGCGCATTAG
AA sequence Show only first row Show all	>Lus10024129 pacid=23141526 polypeptide=Lus10024129 locus=Lus10024129.g ID=Lus10024129.BGIv1.0 annot-version=v1.0 MASYFRYDDLLVPKDQGMSSDEFQSPDSWSNWGLNSTNNFDFSSKNFLPGANLTPPQQLRFDSQTCCNQSEMEGSVLDRDQSSCSSFGAGPVREDSHQHT TTAISPHRPDYQSKGLAGIENMDDHVMNSLLDDLEEMENLQSSPCFSSESQNRLIPADELWTEATLDSDSISSNDFATGSSCQRPHFSPYHMERKGLQQL KVPPFTVSVSSEDDCMDVEAQDQNEPSREESALHELQMVMTQLTTKTRLCFRDALYRLAKSSRPNEVAYKELGMDIASSRVSEDKLSCGGDEMEPQTNTI DRTIANMMFNKMDIDVMDYLISTPTSSDQEFLPNDSHLQHFTSVHHSQIFPGDAEVPASSHSTWIHEAADGGMQVSGTVAH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12320			unknown protein		Lus10024129 [exp]	0	1
AT3G12320			unknown protein		Lus10005384 [exp]	1.0	0.9200
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10026365 [exp]	1.4	0.9099
AT3G54500			unknown protein		Lus10024170 [exp]	3.5	0.8269
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Lus10036760 [exp]	4.6	0.7625
AT3G05640			Protein phosphatase 2C family ...		Lus10016831 [exp]	4.9	0.7781
AT4G38960	CO		B-box type zinc finger family ...		Lus10031087 [exp]	5.7	0.8202
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030183 [exp]	5.9	0.8199
AT3G54500			unknown protein		Lus10039553 [exp]	6.3	0.7580
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10029557 [exp]	6.7	0.7201
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10022187 [exp]	7.5	0.7337

Compare expression of checked genes

Lus10024129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.