Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09860 895 / 0 AtTHO1, AtHPR1 nuclear matrix protein-related (.1.2) AT5G19440 386 / 5e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 374 / 2e-122 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 362 / 8e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 360 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 347 / 2e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G66800 340 / 1e-109 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09500 317 / 1e-100 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G35420 263 / 2e-80 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G58490 258 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008668 [exp] 407 / 6e-135 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 388 / 9e-128 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 378 / 5e-124 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002300 [exp] 374 / 3e-122 AT5G19440 423 / 2e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 367 / 9e-120 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014363 [exp] 367 / 1e-119 AT5G19440 420 / 3e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 361 / 2e-117 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019732 [exp] 333 / 8e-107 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016389 [exp] 317 / 1e-101 AT1G09480 320 / 1e-109 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G031700 [exp] 962 / 0 AT5G09860 916 / 0.0 nuclear matrix protein-related (.1.2) Potri.003G194000 [exp] 941 / 0 AT5G09860 902 / 0.0 nuclear matrix protein-related (.1.2) Potri.009G057800 [exp] 422 / 5e-141 AT5G19440 435 / 5e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 390 / 1e-128 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 389 / 2e-128 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 375 / 5e-123 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057500 [exp] 372 / 7e-122 AT5G19440 444 / 1e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G138600 [exp] 258 / 2e-78 AT4G35420 535 / 0.0 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Potri.008G120200 [exp] 254 / 4e-77 AT1G68540 505 / 0.0 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G257700 [exp] 254 / 3e-76 AT2G33590 400 / 4e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11957 [flax] [poplar] efThoc1 THO complex subunit 1 transcription elongation factor CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10024130 pacid=23141595 polypeptide=Lus10024130 locus=Lus10024130.g ID=Lus10024130.BGIv1.0 annot-version=v1.0 ATGAGCAAGGAGAAGAGTGGAGATGGGAAAATGGTGTGCGTGACAGGCGGTTCAGGCTTCATAGCTTCATGGTTGGTGAAGCTTTTGCTGCAGCAAGGCT ACAGTGTCAAAGCCTCTGTTCGTGACCCAAACAAGGCAAGCCATCTACTCAGCCTTGATGGAGCCACCGACAGGCTTCAATTATTTGAAGCAAATTTGCT CCAAGAAGGCTCCTTTGATTCTGCCATCCAAGGATGCGTCGGAGTTTTCCACACCGCTTCCCCTGTTTCCTTCTCTGTTGATAATCCCCAAACGGAATTA ATTGATCCGGCGGTGAAAGGAACGCTCAATGTCCTGAAATCATGCGCAAAGGCTGCTTCCGTGAAGAGGGTGATCTTGACGTCCTCTGTTTCAACAATTT TCTACACCGGGAAACCATGGACCCAAGACTCAGTAGCCGACGAAACCTGCTTCTCCGATCCAGCAGTTTGTCAAGAGCTTAAGCTATGGTATCCACTGAG CAAGACCTTGGCTGAGAGAGCTGCGTGGGAGTTTGCAGAGAATAATGGGATTGACTTGATTACGATCCTTCCTGGTTTTGTGATTGGCCCTCTTTTACAT CCAACTCTTTGCCTATCCGTTGAGATGATTCTCAACCTGGTAAACGGAAAAGAGACGTACCCCAACATGTATTACAGGTCGGTTGATGTGAGAGATGTTA TTGAAACTCATGTCAAAGCATTTGAGACTCCATCAGCATCTGGAAGATACTGCTTAGTCGGAAGCATTATCCACTTCTCTGAAGTTCTTGAGATGATTCA TGAACTCTACCCAACACTACATCTTCCAGACAAAGGTGTAGATAGCAGCGGCATACCGATGCTACCGAAGTTTGCAGTGTCCAAGGAGAAGGCAGAAAGT TTAGGAATCAATTTCACCCCACTTGAGGAAGACTTCAAGAAAGCCATCCTGCAACCTGGACCTCCTGAAAATTTTGCTCTTCAAACTGTTCAAGAGTTCA TTAAACCTCAGAGGCAAACAAAATTAGTTCAAGATGAGAATCAATTATTGGAAAATATGCTCCGGACGCTGCTTCAAGAGCTGGTGTCTTCTGCAGCACA ATCAGGAGAGGCAATTATGCAATACGGACAGTTAATTGATGATAAAGATGATTCTGATGGCCTTATTCCTCATCTTTTAGATGTTGTGCTATATCTCTGC CAGAGAGAACACATTGAAGGTGGAATGATATTTCAGCTGTTAGAAGACTTGACTGAAATGTCAACTATGAGAAACTGCAAAGACATATTTGGCTACATAG AAAGTAAACAGGATAGCCTTGGGAAGCAAGAACTTTTTGCTCGTGGAAAACTTGTGATGTTGAGGACTTGCAATCAACTCCTTCGTCGTCTTTCAAAGGC AAACGATGTTGTTTTTTGTGGGCGAATTCTCATGTTTCTGGCACATTTTTTCCCATTATCAGAACGTTCAGCGGTCAATATCAAAGGAGTTTTCAACACA TCAAATGAGACGAAGTACGAAAAGGATCCACCGGATGGAATCACTATCGACTTCAACTACTACAAAACCTTGTGGAGTTTGCAGGAGTTCTTCTGCAACC CTGCCTCCTTAACTCCTCCGGCCAAGTGGCAGAAATTTACAGCTAGCCTGGCGATTGTATTGAGTACATTTGAAGCACAACCGTTGAGTGAGGAAGAAGG AGATGCTAATAGTTTGGAGGAAGAGGCAGCAGCTTTCAATATAAAATATCTCACAAGCAGTAAATTGATGGGACTAGAGTTAAAAGATTCGAGCTTCCGA CGCCATGTTCTGGTACAGTGTCTTATACTGTTTGATTATCTTAAGGCACCTGGTAAATCTGACAAGGATGTCACACCTGAGACCATGAAAGAAGAGATAA AATCCTGCGAGGAACGTGTGAAGAAACTTCTTGAGATGACTCCTCCTAAAGGGAAAGATTTTCTTCACAAGATAGAGCATATACTAGAACGTGAAAAAAA CTGGGTTTGGTGGAAGCGTGATGGTTGCCCTCCATATGAGAAGCAACCAGTAGAAAAGAAAACAGTCCAAGAAGGAAGTAAGAAACGTAGGCCGAGGTGG AGGATGGGAAACAAAGAACTGTCGCAATTGTGGAAATGGGCTGACCAGAATCCGAATACTTTGACTGACCCTCAACGTGTCCGGACTCCGTCGATTACAG AGTATTGGAAACCCTTAGCTGAAGATATGGACCCATCAGCCGGAATCGAAGCAGACTATCACCACAAAAACAACCGGGTATATTGCTGGAAAGGTCTGCG GTTTTCAGCAAGGCAGGATCTGGAGGGGTTTTCTAAATTCACTGAACTTGGTGTTGAAGGGGTAGTTCCCCTAGAACTTCTGCCACCCGATGTCCGGGCC AAGTATCAAGCTAAACCAAGTGATAGATCTAAACGCGCCAAGAAGGAAGAAGCCAAGGGCGCATCGCAACCACCTGAAGAATCTCAGGAAGCTGCAATGC TCGAAGGTGCAAAACCAGTAGATCTTGAAGTCTCCGCCTCACCAATGGAGACTGATGCAGCTGCAGCGGCTGTAAGCACTTCCCAAGGCGGAACTCCAAC ACCGGAGGACGAAAAGCAGAACTCTGACACCGATGTAGGTCAAGAAGCAGCGCAATTGGACACAGATGGGCCACTAGAAGGAGATGGTGAAGCCGAAGCA GACGCAGATGTTGAAGCTGTGAGCTAA
AA sequence Show only first row Show all	>Lus10024130 pacid=23141595 polypeptide=Lus10024130 locus=Lus10024130.g ID=Lus10024130.BGIv1.0 annot-version=v1.0 MSKEKSGDGKMVCVTGGSGFIASWLVKLLLQQGYSVKASVRDPNKASHLLSLDGATDRLQLFEANLLQEGSFDSAIQGCVGVFHTASPVSFSVDNPQTEL IDPAVKGTLNVLKSCAKAASVKRVILTSSVSTIFYTGKPWTQDSVADETCFSDPAVCQELKLWYPLSKTLAERAAWEFAENNGIDLITILPGFVIGPLLH PTLCLSVEMILNLVNGKETYPNMYYRSVDVRDVIETHVKAFETPSASGRYCLVGSIIHFSEVLEMIHELYPTLHLPDKGVDSSGIPMLPKFAVSKEKAES LGINFTPLEEDFKKAILQPGPPENFALQTVQEFIKPQRQTKLVQDENQLLENMLRTLLQELVSSAAQSGEAIMQYGQLIDDKDDSDGLIPHLLDVVLYLC QREHIEGGMIFQLLEDLTEMSTMRNCKDIFGYIESKQDSLGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNT SNETKYEKDPPDGITIDFNYYKTLWSLQEFFCNPASLTPPAKWQKFTASLAIVLSTFEAQPLSEEEGDANSLEEEAAAFNIKYLTSSKLMGLELKDSSFR RHVLVQCLILFDYLKAPGKSDKDVTPETMKEEIKSCEERVKKLLEMTPPKGKDFLHKIEHILEREKNWVWWKRDGCPPYEKQPVEKKTVQEGSKKRRPRW RMGNKELSQLWKWADQNPNTLTDPQRVRTPSITEYWKPLAEDMDPSAGIEADYHHKNNRVYCWKGLRFSARQDLEGFSKFTELGVEGVVPLELLPPDVRA KYQAKPSDRSKRAKKEEAKGASQPPEESQEAAMLEGAKPVDLEVSASPMETDAAAAAVSTSQGGTPTPEDEKQNSDTDVGQEAAQLDTDGPLEGDGEAEA DADVEAVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Lus10024130 [exp]	0	1
AT2G34670			Protein of unknown function (D...		Lus10036155 [exp]	2.0	0.8742
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10032200 [exp]	2.2	0.9128
AT4G15030			unknown protein		Lus10029514 [exp]	3.2	0.8719
AT4G10050			esterase/lipase/thioesterase f...		Lus10041054 [exp]	4.0	0.9012
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10024562 [exp]	6.2	0.8792
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10038623 [exp]	6.5	0.8618
AT1G79020			Enhancer of polycomb-like tran...		Lus10034778 [exp]	9.0	0.8667
AT3G27260		GTE8	global transcription factor gr...		Lus10014609 [exp]	10.7	0.8535
AT1G19340			Methyltransferase MT-A70 famil...		Lus10032722 [exp]	11.3	0.8683
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10026528 [exp]	12.7	0.8699

Compare expression of checked genes

Lus10024130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.