Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79400 548 / 0 ATCHX2 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) AT1G16380 541 / 0 ATCHX1 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) AT2G13620 314 / 6e-96 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT5G41610 269 / 1e-79 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT1G05580 257 / 4e-75 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT3G17630 246 / 1e-70 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT3G52080 235 / 7e-67 CHX28 cation/hydrogen exchanger 28 (.1) AT2G31910 232 / 1e-65 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT3G53720 225 / 4e-63 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT4G23700 224 / 9e-63 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024132 [exp] 727 / 0 AT1G16380 641 / 0.0 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) Lus10026156 [exp] 565 / 0 AT1G79400 356 / 1e-114 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10026155 [exp] 433 / 2e-148 AT1G79400 265 / 1e-82 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10005382 [exp] 330 / 5e-104 AT1G79400 342 / 8e-108 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10030013 [exp] 318 / 5e-97 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 319 / 6e-97 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10008666 [exp] 273 / 9e-87 AT1G79400 162 / 3e-45 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10032332 [exp] 278 / 2e-82 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10016403 [exp] 268 / 1e-78 AT3G52080 856 / 0.0 cation/hydrogen exchanger 28 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G194200 [exp] 795 / 0 AT1G79400 625 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.003G194100 [exp] 762 / 0 AT1G79400 597 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.007G105200 [exp] 328 / 3e-101 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.001G096320 [exp] 289 / 2e-86 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 288 / 2e-86 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.003G134900 [exp] 278 / 2e-82 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.009G059400 [exp] 263 / 5e-77 AT3G52080 803 / 0.0 cation/hydrogen exchanger 28 (.1) Potri.010G004800 [exp] 255 / 5e-74 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G005200 [exp] 254 / 6e-74 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.006G054700 [exp] 247 / 5e-71 AT3G53720 982 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10024131 pacid=23141514 polypeptide=Lus10024131 locus=Lus10024131.g ID=Lus10024131.BGIv1.0 annot-version=v1.0 ATGGAAATGGACATCTCCTACACAAGGCGAAACCTCAAGAAGGCAATCACCATAGCCTACGGAGGCATGATAATATGCAGCATCTTCGCAGTCGCCTTAT CCATCTTCATCATCGAATCCGTTAAAGTAACCTCCCATAAGTTCGCCCTCACCAACTTCATCATGATCATCCTATCAAACACAGGTTCCCCCGTGGTGGT CCGCTTGGCCGCAGAGCTCAAGTTCGCCACCGCAGAGGTTGGGCGCCTGGCCATATTGGCATCCCTTATCTGCGAGATCTCCTGTGTCTTGTGGTTCAGC ATCTTCCTCATCTTCTCCTCCAAGAACATGGTCTGGAGAGGGTTCTTGTTTTTTTTCGCAACCTTGGCATTGGTCGTGATCAACAAGTACCTGGCAGCCT GGTGCAACAAGAGGAACCATAACCAGAAGTACGTCACCAACACCGAGGTTCTGGTGTTCTTGTTTCTCGTTGTGGGGCTCGCGTTCTTGATCGAGGCGTC GGGTTTTAATTCGACGATATCTACGTTTGTGGTCGGGCTGATGTTTCCTAAACAAGGGAAGAGTACGAGGACGTTGATGAGGAAGCTGACGTACGCTGTT CATATATTCATTCTTCCCATTTTCTTTGGGTATACTGGGTTTCAGTTCAATGTTTCGTATCTAGCTAGCTGCAAGAACGTTGTAGTTGTTGTTCTTGTGA TGTTCCTTAGCACCGGGGGTAAGATTATTGGGACTCTTACTGCTTGTCGGTATCTTAATATTCCAACTAGTGAAGGCATCGTCCTTGCCTTCCTCCTTAA CTTGAAAGGCCATCCTGAACTTCTGCTCATTGGCAAACTCCCCCCTGCCCTCTTGACATCATGGCACGTACAAGACATCTACAGCCTGGTGGCGACAGTC ACCGTCTTAAACACAGTGATCTCCGGCCCAGCGGCAGCATTTGTGCTGAGGAAAGAGGAGCGCTACTTTGCACATAAGCACACCTCATTGGAATCCTACG AGCCGGAGAGCGAGCTTCGAATTCTGGCATGCATCTATGGATCTCGCCATGTATCGGCCAAAATCGGACTGATCTGGGCCCTCAGCGGATCCTCCTCCTC TACTTCCCCTGTAACCGCCTACTTGATGCACCTCGTCGAGCTTTTCCCCAAACAGCGAACGAAGAAAAACCTAATGTACCACGAATTGAAAGACGGCGAT GATTTCAGCGACGAGGAGGAGTACGGCGGAAATGAGGTCGTGGAGATCAACGACGCGGTGGACTCCTTTTACACCGACACCAAATTCCTTATCCACCAGG TGAAGATCGTATCGGCGTTGGCCACGATGTACGAGGAGGTATGCAATGCCGTGGAGGATCTCCGGATCTCCATCATATTCCTGACTTTCCACAAGCACCA GCGGCTAGACGGGAGATTGGAGACCGGGAAGCCAGGGATACGGACGACGAATCAGAAGGTCCTCCGACACGCGCCATGCTCGGTGGGGATATTCGTGGAC AGAGGGCAGACAGGGTTCCAGCTGCCGTCGCCCGACCAGGTGCAGAACGTGGCGGCCCTTTTCTTTGGTGGGCCGGACGATCGGGAGGCCCTGGCGTGTA CGAAGCGGATCGCAGCACATCCGTTCGTCCAAGTGACGCTAATCAGGTTTATCCAGACGACGCCGTCTGGGTCTGGAGAGGAAACGAAGGGAGAGTTTGA GCCGAGGACTCACCGGAGCGACGAGGTTTTGATGGAGATTCCGGGTCCGGAGATTGACGAGGAGACCGATAACGCCTGCATACACGAATTTTACAACAGG TATGTGACGTCGGGGAAAGTAGGATACGAGGAGATGGAAGTGAGCGACGGGAAGGAAACAGTGAATGCACTGAAAGAGATAGGAGAGATGTATTCATTGT TCATAGTAGGTAAAGGAGGGAGACCCAATTTGGCAATGACGAACGACATGAGCGATTGGGAAGAATGCCCAGAACTAGGAACAGTAGGTGATATATTGGC TTCTTCAGATCTCAACATTAGTGCTTCTGTGTTGGTCATTCAGCAATATCGACATTACCCATCTGAACCACGAGACTGA
AA sequence Show only first row Show all	>Lus10024131 pacid=23141514 polypeptide=Lus10024131 locus=Lus10024131.g ID=Lus10024131.BGIv1.0 annot-version=v1.0 MEMDISYTRRNLKKAITIAYGGMIICSIFAVALSIFIIESVKVTSHKFALTNFIMIILSNTGSPVVVRLAAELKFATAEVGRLAILASLICEISCVLWFS IFLIFSSKNMVWRGFLFFFATLALVVINKYLAAWCNKRNHNQKYVTNTEVLVFLFLVVGLAFLIEASGFNSTISTFVVGLMFPKQGKSTRTLMRKLTYAV HIFILPIFFGYTGFQFNVSYLASCKNVVVVVLVMFLSTGGKIIGTLTACRYLNIPTSEGIVLAFLLNLKGHPELLLIGKLPPALLTSWHVQDIYSLVATV TVLNTVISGPAAAFVLRKEERYFAHKHTSLESYEPESELRILACIYGSRHVSAKIGLIWALSGSSSSTSPVTAYLMHLVELFPKQRTKKNLMYHELKDGD DFSDEEEYGGNEVVEINDAVDSFYTDTKFLIHQVKIVSALATMYEEVCNAVEDLRISIIFLTFHKHQRLDGRLETGKPGIRTTNQKVLRHAPCSVGIFVD RGQTGFQLPSPDQVQNVAALFFGGPDDREALACTKRIAAHPFVQVTLIRFIQTTPSGSGEETKGEFEPRTHRSDEVLMEIPGPEIDEETDNACIHEFYNR YVTSGKVGYEEMEVSDGKETVNALKEIGEMYSLFIVGKGGRPNLAMTNDMSDWEECPELGTVGDILASSDLNISASVLVIQQYRHYPSEPRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10024131 [exp]	0	1
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10039590 [exp]	12.6	0.8512
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10022557 [exp]	13.4	0.7886
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	13.7	0.8289
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	15.7	0.8196
AT3G60660			unknown protein		Lus10036493 [exp]	24.3	0.7973
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10004183 [exp]	27.7	0.8251
AT2G36660		PAB7	poly(A) binding protein 7 (.1)		Lus10014392 [exp]	29.6	0.7269
AT5G05810		ATL43	RING/U-box superfamily protein...		Lus10024248 [exp]	32.9	0.7881
AT5G43020			Leucine-rich repeat protein ki...		Lus10018733 [exp]	33.2	0.8190
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10009112 [exp]	34.6	0.7971

Compare expression of checked genes

Lus10024131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.