Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16380 598 / 0 ATCHX1 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) AT1G79400 598 / 0 ATCHX2 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) AT2G13620 317 / 5e-96 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT5G41610 278 / 1e-81 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT1G05580 262 / 2e-75 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT3G17630 258 / 1e-74 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT3G52080 256 / 7e-74 CHX28 cation/hydrogen exchanger 28 (.1) AT4G23700 253 / 2e-72 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G53720 251 / 1e-71 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT2G31910 237 / 8e-67 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005382 [exp] 837 / 0 AT1G79400 342 / 8e-108 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10024131 [exp] 719 / 0 AT1G79400 580 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10026156 [exp] 441 / 5e-147 AT1G79400 356 / 1e-114 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10026155 [exp] 353 / 4e-116 AT1G79400 265 / 1e-82 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Lus10030013 [exp] 326 / 6e-99 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 325 / 2e-98 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10016403 [exp] 278 / 9e-82 AT3G52080 856 / 0.0 cation/hydrogen exchanger 28 (.1) Lus10032332 [exp] 273 / 1e-79 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10019716 [exp] 268 / 3e-78 AT3G52080 857 / 0.0 cation/hydrogen exchanger 28 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G194200 [exp] 827 / 0 AT1G79400 625 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.003G194100 [exp] 794 / 0 AT1G79400 597 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.007G105200 [exp] 333 / 7e-102 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.003G134900 [exp] 299 / 2e-89 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 291 / 1e-86 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 289 / 9e-86 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.009G059400 [exp] 278 / 6e-82 AT3G52080 803 / 0.0 cation/hydrogen exchanger 28 (.1) Potri.010G004800 [exp] 268 / 5e-78 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G005200 [exp] 268 / 6e-78 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.004G131300 [exp] 251 / 1e-71 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10024132 pacid=23141533 polypeptide=Lus10024132 locus=Lus10024132.g ID=Lus10024132.BGIv1.0 annot-version=v1.0 ATGGATCAAGCGAAGCGCCTCCTCTGTACCCATGACCTATGGAACCCTCTCAACACAACTTTTGTACAGACCTGTGGCATGCTCCTCGTCTCCCAGATCT TCCACGTCATCCTCAAACCCCTCGGCCAACCCGGCCCCGTCGCCCAAATCCTCGCGGGATTGGTGTTGGGACCCTCATTGCTATGCAAAATCGACAGAAT ACGGCACGTCTTCATACAGCCCACGTCCGACGACTACAGCTTCCTCCTCCTCTTCGTATTTCGGATCCTTTTCATGTTCACCATCGGCCTCGAAGCGGAT CTCCCTTACATCTCCAGAAACTACCAGAAGATCGGCGTGATCGCCGCCTGGGCGGTGGCTGTGTGCGCCGTGTTCGGTGCCGCGGCGTCCTTCTTCGTAA TCAATGTCCTCAAGGTGACGGCGCATAAGTTCGCGTTCGCCAACATCATTATGATCATCGTCTCCAGCTGCGCCTCCCCTGTCGTCGTCCGCCTCGTCGC CGAGCTCAAGTTCGACACCGCTGATGTCGGGAGGCTCGCCATCTCCACTGCGTTGTTCGTGGAGCTGTTCTGCATCACTTGGTACTCCACCTACTTGGCT TTCAGCGCCGGGAAGATGTTTGGGTTTGCCGTCGTCTGCGTCATCGGTACTGGGATCGTCGCTTACGCAAACAGATTCCTGGCACTATGGTGCAACAAGA GGAGCAGGAACATGAAGTTCGTGCCGAACACAGAGATGTCAGCGATACTGGTGCTCGTAATCTTACTATCTTTCATGACAGAAAAGCTGGGGTACAACAG TATGATCTCCTGCTTCCTGGTAGGGGTGGCTTTCCCTAGGGAAGGCAAGACCACCAGGACGTTACTCCACCGCCTGACTTACGCCGTCAACAACTTCATC CTCCCTGTCTACTTCGGATTCAACGGCTTCAGGTTCGACATCAACTACCTGCTCAACCTCAGGAACTGCATAGTGGTCGGGCTGGTGATAGTGTTGAGCA TGGGGGGGAAGATCATCGGCACCTTATTCGCTTGCCAGCACTTGAAAATCCCGAGGAATGAAGGCGTCGTCCTTGCCTTCATTCTCAATTTGAAGGGACA CGGCGAGCTTCTTGTCATCGAAGCTTTCTCCAGGTCAGACACATGGTGGGACGAGAACACACACAAGCTAGTGATAATAATAGTAGTGATCAACACCTTA ATAGCAGGTCCAGTAGTTTCCTTCATCCTCAACCGAGAAGCCAACTACTTCGCCCACAACCTCACCTTCCTCGAATTCCTCGACCCTGAAAAGGAGCTCC GTTTCCTCGTCTGCGTCTACGAGTCCCGCCACATCACCTCCAAGCTCGGCCTCATCTCCGCCATGACCGGCTCACAGCGCTTCCCCACCGTCACCTACCT CCTCCACCTCATCGAGCTCCTCAAAAAACACCGTCGCAAGAAAAAACTCATGTACCACGAACTCCAAGACGGCGACCAGTTCAGCGACGACGACGAGTAC GGCGGTAACGACGTCGTAGAGATCAACGACGCCGTCGACGCCTTCACCACCGACAGCAAGATCCTAATCCACCAGAGCAAAGCAGTCTCCTCCTTCCCGA AAATATACGAGGACGTGTGCTCTACGGCGGAGGACATGCGCGTGTCCATAGTTTTCCTCACTTTCCACAAGCACCAGCGGCTGGACGGGAAGCTCGAGAA CGATAAAGACGGGGTGCGGATCGTGAACCAGAAGGTTCTTCGTCACGCGCCGTGCTCGGTCGGGATATTTGTGGACCGTGGACTTACTGGATTTCAGTTG CCCAGCCCAGAGTTGGTCCAGAACGTGGCCACTTTGTTCTTTGGTGGGCCTGACGATAGGGAGGCTTTGGCCTGTTGTAAGCGGATAGCGGTGCATCCGT ACGTGAATTTGACGGTGGTTAGGTTCCAGTCGGGGGGTTTTCCGAAGAATAAGCTGGTGCAGGGTAGGAAGGGTGAGGAGCAGGAGCAGCATATATCGAT ATCGAGCTATGAGGTGGATATGGCGATTGATAATGTGTTCATGGAGGATTTTTGCAATAGGTACGTGACGTCGGGGAAAGTGAAGTACGTGGAGAAGAGG ACGGAGAACGGGGAGAGAACGGTGGAGATATTGAAAGAGATAGGGGAGATGTACTCGTTGTTGATAGTAGGGCAAGGAGGGAGGGGGAGTTGTCCGATGA CGACGGGGATGAGTGACTGGGAGGAGTGTCCGGAGTTAGGGGCGGTGGGGGATATATTGGCTTCTGCAGAGCTTAATTTGGGTGCTTCCATTTTGGTCAT TCAGCAGCATAAGCATGCTATCGAAGGCCGCGATGGTCGTGACGATGGCTGA
AA sequence Show only first row Show all	>Lus10024132 pacid=23141533 polypeptide=Lus10024132 locus=Lus10024132.g ID=Lus10024132.BGIv1.0 annot-version=v1.0 MDQAKRLLCTHDLWNPLNTTFVQTCGMLLVSQIFHVILKPLGQPGPVAQILAGLVLGPSLLCKIDRIRHVFIQPTSDDYSFLLLFVFRILFMFTIGLEAD LPYISRNYQKIGVIAAWAVAVCAVFGAAASFFVINVLKVTAHKFAFANIIMIIVSSCASPVVVRLVAELKFDTADVGRLAISTALFVELFCITWYSTYLA FSAGKMFGFAVVCVIGTGIVAYANRFLALWCNKRSRNMKFVPNTEMSAILVLVILLSFMTEKLGYNSMISCFLVGVAFPREGKTTRTLLHRLTYAVNNFI LPVYFGFNGFRFDINYLLNLRNCIVVGLVIVLSMGGKIIGTLFACQHLKIPRNEGVVLAFILNLKGHGELLVIEAFSRSDTWWDENTHKLVIIIVVINTL IAGPVVSFILNREANYFAHNLTFLEFLDPEKELRFLVCVYESRHITSKLGLISAMTGSQRFPTVTYLLHLIELLKKHRRKKKLMYHELQDGDQFSDDDEY GGNDVVEINDAVDAFTTDSKILIHQSKAVSSFPKIYEDVCSTAEDMRVSIVFLTFHKHQRLDGKLENDKDGVRIVNQKVLRHAPCSVGIFVDRGLTGFQL PSPELVQNVATLFFGGPDDREALACCKRIAVHPYVNLTVVRFQSGGFPKNKLVQGRKGEEQEQHISISSYEVDMAIDNVFMEDFCNRYVTSGKVKYVEKR TENGERTVEILKEIGEMYSLLIVGQGGRGSCPMTTGMSDWEECPELGAVGDILASAELNLGASILVIQQHKHAIEGRDGRDDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16380		ATCHX1	CATION EXCHANGER 1, Cation/hyd...		Lus10024132 [exp]	0	1
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038382 [exp]	3.2	0.8823
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10029804 [exp]	6.0	0.8751
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10029125 [exp]	6.2	0.8482
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10021498 [exp]	7.3	0.8820
AT5G67130			PLC-like phosphodiesterases su...		Lus10009368 [exp]	8.7	0.8710
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003622 [exp]	8.7	0.8686
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10009820 [exp]	8.8	0.8209
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Lus10033097 [exp]	9.9	0.8575
AT1G62870			unknown protein		Lus10004325 [exp]	11.0	0.8556
AT1G76660			unknown protein		Lus10025171 [exp]	11.0	0.8575

Compare expression of checked genes

Lus10024132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.