Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15140 91 / 3e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005381 [exp] 724 / 0 AT3G15140 90 / 3e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10009194 [exp] 76 / 3e-15 AT3G15140 298 / 1e-100 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10011629 [exp] 41 / 0.0004 ND 39 / 6e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G030900 [exp] 626 / 0 AT3G15140 94 / 3e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G194300 [exp] 613 / 0 AT3G15140 96 / 8e-22 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.011G141300 [exp] 97 / 4e-22 AT3G15140 397 / 6e-139 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF06839 [flax] [poplar] zf-GRF GRF zinc finger CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10024133 pacid=23141477 polypeptide=Lus10024133 locus=Lus10024133.g ID=Lus10024133.BGIv1.0 annot-version=v1.0 ATGATGGCTCTTGAACAAAAAGGTGCACTTTCCACTATCTTGTCCCACTCTGACCATGAACATCAACTCTTGCTCTGTATACAAGGTTTTGTTCAGGAAA CTCTAAAAAGGAGCTGTGAGGCATCTATAAAAGTCCTCCAGCCCAAGGAATTCCCTTCTGGGAATTTAATTAAAGGCTTTCCTGAGCTTAAAGGAAAAAT AAATGTTCAGTCAAGTGGGGATGTTGTGGAACCAGTTCATTTGATGAGCACAGAATTTTCCGAACCTCCTCCTAATGAATTCCACAACTCACCAGCTTAC CATCATGATTTTGGCTCGTGGCCTGCCCCCTATCAGGAGCCTCAAAAGATGCAACACTGGAATATGAACTGTTTTGAGGGCCAATACTATCCCTTTCATT TGGAGACTCGTGTACAGTATCCCCCATATCAAATGTATTCTCAGGGATACCCACAGGAGTACCAACTTCAAGATTTTCAGTACTTTGTGGTTATAGATTT TGAGGCTACATGTGATAAGGGGAACAATCCACATCCACAAGAGATCATTGAGTTTCCATCTGTCATTGTCAGTAGTATGACCGGTCAACTAGAAGCTTGT TTCCAGACTTATGTGAGACCAACATGCAATCAGCTTCTAACCGACTTCTGCAAGGATCTAACTGGCATCCAACAAATTCAGGTGGATAGAGGTGTTACTC TGAGTGAGGCATTGCTTAGACATGACAAATGGCTTGAAAACAAGGGGATTAAGAACACTAACTTTGCTGTAGTGACATGGTCAGACTGGGATTGCAGGGT TATGTTAGAATCCGAGTGTCAATTCAAGAAGATCAGGAAGCCTCCTTATTTTAACCGGTGGATCAACTTGAAAGTACCATTCCGTGAGATATATGGTGGA GTTAGATGCAATTTGAAGGAGGCTATAGAGATGGCAGGACTACCATGGCAAGGTCGCGCTCATTGTGGATTAGATGATGCCAAAAACACCGCACGCTTAC TCTCCCTTTTCATGAGGAGGGGTGTAAAGTTCTCCATTACAAACTCCATTAAATGGCAGAGAAATGATGGTTCGGTTTCAGGGGAGCAGCCCCCGGAGTA TTTACCTTTTTCACCACAACAACCGTCATACAAGCAGTATCAGCATCAACATCATCATCCCTTGTGCTTTTGTGGGGTGAAAAGCACCCAAGGAATGGTC CGAAAGCCTGGTCCAAAGCAAGGCAACCATTTCTATGGCTGTGGGAACTGGACCGCAACTAGAGGTGCCCGCTGCCATTACTTTGAATGGGTATCTACCT GA
AA sequence Show only first row Show all	>Lus10024133 pacid=23141477 polypeptide=Lus10024133 locus=Lus10024133.g ID=Lus10024133.BGIv1.0 annot-version=v1.0 MMALEQKGALSTILSHSDHEHQLLLCIQGFVQETLKRSCEASIKVLQPKEFPSGNLIKGFPELKGKINVQSSGDVVEPVHLMSTEFSEPPPNEFHNSPAY HHDFGSWPAPYQEPQKMQHWNMNCFEGQYYPFHLETRVQYPPYQMYSQGYPQEYQLQDFQYFVVIDFEATCDKGNNPHPQEIIEFPSVIVSSMTGQLEAC FQTYVRPTCNQLLTDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLENKGIKNTNFAVVTWSDWDCRVMLESECQFKKIRKPPYFNRWINLKVPFREIYGG VRCNLKEAIEMAGLPWQGRAHCGLDDAKNTARLLSLFMRRGVKFSITNSIKWQRNDGSVSGEQPPEYLPFSPQQPSYKQYQHQHHHPLCFCGVKSTQGMV RKPGPKQGNHFYGCGNWTATRGARCHYFEWVST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15140			Polynucleotidyl transferase, r...		Lus10024133 [exp]	0	1
AT2G37975			Yos1-like protein (.1)		Lus10000226 [exp]	1.7	0.8829
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031262 [exp]	1.7	0.8876
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	2.8	0.8862
AT2G23780			RING/U-box superfamily protein...		Lus10022492 [exp]	2.8	0.8781
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10023833 [exp]	5.2	0.8394
AT5G38900			Thioredoxin superfamily protei...		Lus10034369 [exp]	6.9	0.8528
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10017390 [exp]	7.1	0.8660
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10018296 [exp]	8.1	0.8351
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10038893 [exp]	8.4	0.8487
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10036203 [exp]	10.6	0.8404

Compare expression of checked genes

Lus10024133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.