Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58660 288 / 5e-94 Ribosomal protein L1p/L10e family (.1) AT2G42650 274 / 4e-89 Ribosomal protein L1p/L10e family (.1) AT1G06380 205 / 4e-64 Ribosomal protein L1p/L10e family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005380 [exp] 511 / 0 AT3G58660 354 / 1e-119 Ribosomal protein L1p/L10e family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G145000 [exp] 325 / 4e-109 AT3G58660 352 / 2e-118 Ribosomal protein L1p/L10e family (.1) Potri.015G147700 [exp] 299 / 1e-98 AT3G58660 348 / 9e-117 Ribosomal protein L1p/L10e family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024134 pacid=23141498 polypeptide=Lus10024134 locus=Lus10024134.g ID=Lus10024134.BGIv1.0 annot-version=v1.0 ATGGTAACTCCGCCGCCAGGAACCGGTGTTGGTCCCGAAACAGTTGAGAGAGCTGTGAACGCTCTCCTGGGTTGGCGAGCTGCCAAGAAGAAATCCGAGA AAGCTCAGCTCTTAGAACAGGATGAATTCGTTTATGTGGTCTTATCTCTCAAGAAAATCCCTGAAAAGGGCGTCAGTCGAGTCAAGCCGTACAAGGTCGA TCTCCCTCATCCCCTTGTAAACACTCAAGACGGAAGTTCGGAGCTCTGCTTGATCATTGACGATAGGTCCAAATCCGGGCTCACTAAGGAAGACGCCAAG AAGAAGATTGACAACGATGGAATCAACATCTCCAAAATCATCAAGCTTTCCAAGCTTAAGACGGACTACAAGGCGTTTGAGGCGAAGAGGAAGCTTTGCG ATTCGTACGACTTGTTTTTGGCGGACAGGAGAGTGATTCCGTTGTTGCCGAAGATGTTGGGGAAGGAGTTCTTCAGGAAGAAGAAGATTCCTGTGTCGGT CAATTTGAAACACAAGAACTGGAAGGAACAGATTGACAGTGCTTGTGGATCTGCTCTGGTGTTTGTTGGGACAGGTACTTGTGCTGTTGTGAAAGCAGCA AGGCTGTCAATGGAGAAAGATGAGATTTCGGAGAATGTAATGGCTACGATCAATGGGGTTGTTGAGAAAGTTGTGCCTAAGAAGTGGGGTGGTGTTAGGT CCCTTCACTTGAAGCTACTTGATAGCTTGGCCCTGCCTCTTTATGAGACTGTTCCGGAGTTGAAGTTGAAGATTGTGAGTCAGAAAGCGGCGGTAGAAGA GGAAAAAGAGGAGAAGGAAGATGTGAAGGAGAACGTTGAGAAGAAGAAGAAGAAGAAGGGAAGAATCAGTGAGGTTAGGTATATGGACAGTAATGGTGAT GCAGCTGATATTGAAGAAGTTGAGAAAGATGCTGCATTGGTTAATGATGGTGATGATGAGAAGGAAGGGATGGGAAGTGCTGAGGTTGTGGTTAAAAAGA GGAAGAAGGGAGTTAAAGGCCAAGATGAGAAAAGGGCAAAGAAGGTAGCTAAAGTGCTGAAGGTTGTAGATGGTGGCATCAAGGGGAAGAAAGGAGTCAG TAAAGGGGCAGATGAGGCGAGCATCAAGCTGAAGAGAAAGAAGAAGAAAGTATCAGCTGAAGCTTAA
AA sequence Show only first row Show all	>Lus10024134 pacid=23141498 polypeptide=Lus10024134 locus=Lus10024134.g ID=Lus10024134.BGIv1.0 annot-version=v1.0 MVTPPPGTGVGPETVERAVNALLGWRAAKKKSEKAQLLEQDEFVYVVLSLKKIPEKGVSRVKPYKVDLPHPLVNTQDGSSELCLIIDDRSKSGLTKEDAK KKIDNDGINISKIIKLSKLKTDYKAFEAKRKLCDSYDLFLADRRVIPLLPKMLGKEFFRKKKIPVSVNLKHKNWKEQIDSACGSALVFVGTGTCAVVKAA RLSMEKDEISENVMATINGVVEKVVPKKWGGVRSLHLKLLDSLALPLYETVPELKLKIVSQKAAVEEEKEEKEDVKENVEKKKKKKGRISEVRYMDSNGD AADIEEVEKDAALVNDGDDEKEGMGSAEVVVKKRKKGVKGQDEKRAKKVAKVLKVVDGGIKGKKGVSKGADEASIKLKRKKKKVSAEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10024134 [exp]	0	1
AT4G18905			Transducin/WD40 repeat-like su...		Lus10001126 [exp]	1.4	0.8418
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10005380 [exp]	2.2	0.8449
AT5G62440			Protein of unknown function (D...		Lus10021669 [exp]	6.3	0.8082
AT1G80860		ATPLMT	ARABIDOPSIS PHOSPHOLIPID N-MET...		Lus10026087 [exp]	9.5	0.7739
AT1G30880			unknown protein		Lus10001224 [exp]	10.5	0.8075
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10038910 [exp]	10.6	0.7995
AT2G31410			unknown protein		Lus10031995 [exp]	11.3	0.7938
AT1G09590			Translation protein SH3-like f...		Lus10021079 [exp]	11.5	0.8165
AT5G24840			tRNA (guanine-N-7) methyltrans...		Lus10026965 [exp]	13.4	0.7716
AT5G27120			NOP56-like pre RNA processing ...		Lus10018995 [exp]	13.5	0.7811

Compare expression of checked genes

Lus10024134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.