Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13530 273 / 6e-84 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT1G21651 50 / 6e-07 zinc ion binding (.1) AT1G21650 50 / 7e-07 SECA2 Preprotein translocase SecA family protein (.1.2.3) AT1G49230 40 / 0.0006 RING/U-box superfamily protein (.1) AT3G29270 40 / 0.0007 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039491 [exp] 132 / 9e-35 AT5G13530 2343 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10028560 [exp] 46 / 1e-05 AT1G21650 687 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Lus10025228 [exp] 42 / 9e-05 AT5G01880 97 / 5e-26 RING/U-box superfamily protein (.1) Lus10025146 [exp] 42 / 0.0002 AT3G10910 128 / 8e-38 RING/U-box superfamily protein (.1) Lus10005220 [exp] 41 / 0.0004 AT3G29270 317 / 3e-109 RING/U-box superfamily protein (.1.2) Lus10025145 [exp] 40 / 0.0004 AT5G01880 96 / 6e-26 RING/U-box superfamily protein (.1) Lus10030699 [exp] 40 / 0.0007 AT3G29270 310 / 5e-107 RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G029600 [exp] 290 / 1e-89 AT5G13530 2587 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.001G274900 [exp] 124 / 3e-32 AT5G13530 1856 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.019G066500 [exp] 44 / 7e-05 AT1G21651 716 / 0.0 zinc ion binding (.1) Potri.017G090000 [exp] 41 / 0.0005 AT3G29270 281 / 2e-95 RING/U-box superfamily protein (.1.2) Potri.002G006400 [exp] 40 / 0.0005 AT1G76410 177 / 1e-56 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10024135 pacid=23141580 polypeptide=Lus10024135 locus=Lus10024135.g ID=Lus10024135.BGIv1.0 annot-version=v1.0 ATGAAGGTCCCTTGCTGCTCAGTTTGCCAGAATCGATACAATGATGAAGAGAGAGTTCCTCTGTTGCTTCAGTGCGGACATGGATTTTGCAAGGAATGCT TGTCCAAGATGTTCTCTGCTTCCCAGGACACAACCCTCGTCTGCCCTCGCTGCCGCCATGTCTCCGTTGTTGGAAACTCGGTTCACGCCTTGCGGAAGAA CTATGCCGTCCTTGCGCTTCTTCACTCTCCTTCATCAGCTGCCATGGCATCCAATTTCGATTACACGGATGACGAGGACGATGATGAGGATGAGCGAGGG AACGATGAGGAAAATGAAGCGGAGAGGTGCAGCAGAGGCTCTCACGCCTCCAGCTCCGGAACTTGCGGGAGGGTGATTGAAGTCGGGGTTCATCAGGAAG TGAAATTGGTTAAGAAGATTGGGGAAGGGCGGAGGGCCGGAGCGGAGACTTGGTCGGCGGTGATTGCCAGCAGTGCGGTGGCCGGCAAGTGTAGACATCG GGTAGCTGTGAAGAAAGTTGAGGTTGGGGAAGGGGTGGAAGTGGAGTGGGTGCAAGCTCAGCTGGAAAACTTGCGGCGTGCTTCAATGTGGTGTAGAAAC GTGTGTACTTTCCATGGTGTTGTGAAAGTGGATGGATGTTTAGGGCTTGTAATGGATAAGTATTGTGGCTCTGTTCAGTCTGAGATGCAGCAGAATGAAG GAAGGCTCACCCTGGAGCAAATTCTGAGGTTTCGTGTTAAGCCATTTTGTGTTCTTTAA
AA sequence Show only first row Show all	>Lus10024135 pacid=23141580 polypeptide=Lus10024135 locus=Lus10024135.g ID=Lus10024135.BGIv1.0 annot-version=v1.0 MKVPCCSVCQNRYNDEERVPLLLQCGHGFCKECLSKMFSASQDTTLVCPRCRHVSVVGNSVHALRKNYAVLALLHSPSSAAMASNFDYTDDEDDDEDERG NDEENEAERCSRGSHASSSGTCGRVIEVGVHQEVKLVKKIGEGRRAGAETWSAVIASSAVAGKCRHRVAVKKVEVGEGVEVEWVQAQLENLRRASMWCRN VCTFHGVVKVDGCLGLVMDKYCGSVQSEMQQNEGRLTLEQILRFRVKPFCVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10024135 [exp]	0	1
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040531 [exp]	2.2	0.9637
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10016597 [exp]	3.2	0.9534
AT2G07360			SH3 domain-containing protein ...		Lus10027587 [exp]	4.2	0.9571
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017747 [exp]	4.6	0.9555
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10022224 [exp]	8.0	0.9543
AT3G12590			unknown protein		Lus10005160 [exp]	11.5	0.9379
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005323 [exp]	11.8	0.9380
AT5G06120			ARM repeat superfamily protein...		Lus10024115 [exp]	12.6	0.9250
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10026726 [exp]	12.7	0.9271
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019751 [exp]	13.0	0.9378

Compare expression of checked genes

Lus10024135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.