Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13530 2088 / 0 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT4G32250 86 / 9e-17 Protein kinase superfamily protein (.1.2.3) AT3G04710 76 / 6e-14 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT2G28840 74 / 4e-13 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT5G14230 65 / 3e-10 unknown protein AT2G26650 64 / 7e-10 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT4G35450 60 / 3e-09 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT2G03430 60 / 3e-09 Ankyrin repeat family protein (.1) AT4G22200 61 / 5e-09 AKT3, AKT2/3 potassium transport 2/3 (.1) AT2G31800 61 / 6e-09 Integrin-linked protein kinase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039491 [exp] 2581 / 0 AT5G13530 2343 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10001499 [exp] 93 / 7e-19 AT4G32250 708 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10019343 [exp] 90 / 4e-18 AT4G32250 627 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10009358 [exp] 88 / 3e-17 AT4G32250 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10002923 [exp] 87 / 6e-17 AT4G32250 716 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10002621 [exp] 84 / 1e-16 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10020272 [exp] 85 / 2e-16 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10037694 [exp] 71 / 1e-11 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10015687 [exp] 70 / 1e-11 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G029600 [exp] 2278 / 0 AT5G13530 2587 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.001G274900 [exp] 1805 / 0 AT5G13530 1856 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.013G062000 [exp] 98 / 8e-21 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.018G026400 [exp] 86 / 1e-16 AT4G32250 809 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G255700 [exp] 82 / 1e-15 AT4G32250 828 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G238800 [exp] 73 / 6e-13 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.001G333600 [exp] 74 / 7e-13 AT5G14230 975 / 0.0 unknown protein Potri.005G054800 [exp] 71 / 2e-12 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.009G030000 [exp] 70 / 7e-12 AT2G28840 619 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.010G185200 [exp] 67 / 6e-11 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10024136 pacid=23141585 polypeptide=Lus10024136 locus=Lus10024136.g ID=Lus10024136.BGIv1.0 annot-version=v1.0 ATGAACTTAAAACCGTCCAATCTTCTTCTGGATTCAGGTGGCCGTGCTGTTGTTTCTGATTATGGACTTGCTTCCATTTTAAAGAAACCAACTTGCCGCA AAGCCAAAACAGAATGTGATTCTGCCAAAATTCATTCATGCATGGACTGCATAATGCTCAGTCCACACTACACAGCACCAGAGGCTTGGGAGCCGGTCAA GAAGTCTCTGAATCTTTTCTGGGATGATGCAATCGGCATATCTGCTGAATCAGATGCCTGGAGCTTTGGATGTACATTGGTAGAGATGTGCACCGGTGCT ACTCCGTGGGCTGGTCTGAGTGCAGAAGAAGTTTACCGTGCTGTTGTTAAAGCTCGAAAATTGCCTCCACAGTATGCCAGTGTGGTTGGTGTTGGAATTC CTAGAGAATTATGGAAAATGGTTGGTGAATGCTTACAGTTCAAACCATCAAGGAGGCCAACGTTTAATGCAATGTTAGCGATATTCATCCGTCATCTGCA GGAGCTGCCACGTACCCCTCCTGCAAGTCCTGATAATGACTATGTACAAAAACCTGGTTCAAATGTAGCTGAACCATTACCACCATCTGATTTGGAGGAT TTGCCAGACAACTCCAGCCATCTACATAGACTCGTCTCGGAGGGAAATGTAATTGGTGTTAGAGATCTACTATCAAAGGCTGCATCAGTAAGTAGTGGTG ATTCTGTATACAGACTGCTCGAAGCACAGAATGCTGATGGCCAAACAGCACTTCACCTGGCTTGTAGACGTGGGTGTGCAGAACTCGTTCAGACCATACT GGAGTATAGAGAAGCAAATGTTGATGTCCTGGACAAGGATGGTGATCCACCACTTGTTTTTGCTTTAGCTGCTGGATCACCAGAATGTGTTCATGCTCTA ATTAGGAGTGGGGCTAATGTCAGATCCCGGTTAAGGGAAGGGTTTGGTCCATCGGTTGCTCATGTTTGTGCCTACCATGGCCAGCCAGATTGTATGCGTG AGCTTTTGCTTGCTGGAGCGGATCCTAATGCTGTAGATGATGAAGGTGAATCTGTACTACATAGAGCTCTATCAAAGAAGTATACTGATTGTGCTATTGC TATACTGGAAAATGGAGGCTGCAGATCAATGGCTTTTGTGAATTCAAAAAATTTGACACCATTGCACTTGAGTGTAGCAACATGGAGTGTGGCTGTTGTC AGAAGGTGGGTAGAAGTCGCCTCCCAAGATGACATTGCTGAGGCAATTAATATTCCAAGCCCAGTTGGAACTGCTTTGTGTATGGCTGCTAGTTCCAAGA AAGATCATGAAATTGAAGGGAGACAGTTAGTGCAAATTTTGCTCGCTGCTGGAGCAGATCCAACTTCTCAGGATGCACCTCATGGGAGAACAGCCTTGCA CACAGCTTCTATGGCTAATGATGTTGAGTTGGTGAAGATAATTCTGGATGCTGGAGTTGATGTGAACATCCGGAACATGCATAACACCATACCTCTCCAT GTAGCTCTGGCTAGAGGAGCAAAATCATGTGTTGGCATACTCTTAAATGCCGGGGCAAATTGCAACATCCAGGATGATGAAGGTGATACTGCCTTTCACA TAGCAGCTGATGCTGCAAAAATGATACGAGAAAATCTTGAATGGCTGATCATTATGCTTGGGAATCCTAATGCAGCCATTGAAGCAAGAAATCACAGGCT AGTGGCTTTAACATTACGTGATTATTTGGAAACTCTACCACGGGAATGGATTTCTGAAGACCTAATGGAGGCTCTCTTGAAGAGGGAAGTGCATTTATCT CCTACGATATATGAAGCTGGAGATTGGGTAAAGTTCAAGAGAAGTTTGACCACTCCTGCAAAGGGATGGCAAGCTGCAAAACACAAGAGTGTGGGGTTTG TTCAAACAGTTGTTGACAAGGACAATCTAGTCGTCTCATTCTGTACTGGGGAGGCTCATGTTTTAGCCAGTGAAGTATGGAAGGTGATTCCCTTGGATCG TGGTCAGCATGTCAGGCTCAAAGCAGATGTAAAAGAGCCAAGGTTTGGATGGCGTGGCCAATTACGAGACAGCATTGGAACTGTCCTGTGTGTTGATGAC GATGGCATTTTACGTGTTGGGTTTCCTGGAGCGTCTCGAGGGTGGAAAGCTGACCCTGCAGAAATGGAGAGAGTTGAAGAATTCAAGGTTGGTGACTGGG TTCGTATTCGCCCGACACTAACAACAGCCAAGCAACTGTTACTCCTTTCAGGGTATGTGAAGAATCTTGGTGTGTTCTTTCCTAATATTCTTCTCATTGG TGACCGTGTATGTGTAAAGCGTTCTGTTGCTGAACCTAGATATGCTTGGGGCGGTGAGACCCATCACAGTGTAGGAAGGGTTAGCGAGATAGAAAATGAT GGCTTGTTAATAATTGAAATACCAAATCGACCTATTCCATGGCAAGCTGATCCATCTGACATGGAAAAAGTAGAGGATTTCAAGGTTGGAGATTGGGTCA AGGTAAAAGCTTCAGTTTCTTCTCCTATCTATGGATGGGAGGATGTTTCACGGAACAGCATCGGTGTGATTCACAGTTTAGAAGATGACGGCAATATTGG TGTTGCCTTCTGTTTCAGAAGCAAGCCCTTCTGCTGTTCTGTGACAGATGTGGAAAAGGTTCTTCCTTTTGAGCTAGGACAGGAAGTGCGTGTGATGGCT TCCGTTACTCAGCCACGACTAGGGTGGTCAAATGAAAGTCCTGCAACTGTTGGGAAAATTGCGAAAATTGACATGGATGGAACTTTGAATGTGATGGTTG CTGGCAGGCGTGGTTTATGGAAAATGTCTCCTGGAGATGCAGAACGGCTTTCTGGATTTGAAGTTGGTGATTGGGTACGCTCCAAACCTAGTCTAGGGAC CAGACCTAGTTATGATTGGAATACTATAGGAAAGGAAAGCTTAGCTGTTGTGCATAGTGTGCAAGAGACCGGTTACCTGGATCTAGCTTGCTGTTTCCGA AAGGGAAGGTGGAGTACTCATTACACAGATGTTGAAAAGGTTCCAAGCTTGAAAGTAGGGCAGCATGTACGGTTTCGGACTGGAATTGTTGAGCCAAGGT GGGGCTGGAGGGGTGCTCAGCTTGATTCACGAGGCATAATAACCAGTGTTCATGCTGATGGAGAAGTCAGAGTTGCTTTCTTTGGCCTGTCAGGGTTATG GAGAGGCGATCCTGCTGATCTGGAGATAGAGCAAATGTTTGAAGTGGGTGAATGGGTGAGGTTGGGGAAAGATGCAAGCAACTGGAAGTCTATTGCTCCA GGATGCGTTGGTATTGTACAGGGTATAGGGTATGATGGAGATAAATGGGACGGAAGTACTTACGTGGGGTTTTGTGGCGAACAAGAAAGATGGGTGGGCC CTACTTCTCATCTCGAAAGAGTGGAGAGGCTTGTCGTCGGCCAGAAAGTTAGGGTTAAACTCTCTGTAAAACAACCTAGATTCGGATGGTCAGGTCATAG TCATGGAAGTCTTGGAACAATAGCAGCGATTGACGCTGATGGGAAGTTGAGAATATACACTCCGGCAGGGTCGAAAACTTGGATGCTCGACCCATCCGAA GTTGAACTAGTCGAGGAAGATGAGCTTGGAATAGGGGACTGGGTGAGAGTTCGGAAATCAGTTGCAACGCCTACTCACCAATGGGGAGAGGTAAATCATT CAAGCATCGGAGTAGTGCATCGGATGCAAGATGGGGAGCTATGGGTTGCATTTTGTTTCATGGAGAGGCTATGGCTTTGCAAGGCATGGGAAATGGAAAG GCTAAGACCATTTGAAATAGGGGACAAGGTAAGGATCCGAGACGGGTTGATAACACCGCGGTGGGGATGGGGAATGGAGACTCACACGAGTAAAGGTGAG GTAGTTGGGGTGGATGCAAATGGTAAGTTAAGAATAAAGTTCCAGTGGAGAGAAGGGCGGCCATGGATTGGCGATCCTGCTGATATTGTTGTCGACGAAA GCTAA
AA sequence Show only first row Show all	>Lus10024136 pacid=23141585 polypeptide=Lus10024136 locus=Lus10024136.g ID=Lus10024136.BGIv1.0 annot-version=v1.0 MNLKPSNLLLDSGGRAVVSDYGLASILKKPTCRKAKTECDSAKIHSCMDCIMLSPHYTAPEAWEPVKKSLNLFWDDAIGISAESDAWSFGCTLVEMCTGA TPWAGLSAEEVYRAVVKARKLPPQYASVVGVGIPRELWKMVGECLQFKPSRRPTFNAMLAIFIRHLQELPRTPPASPDNDYVQKPGSNVAEPLPPSDLED LPDNSSHLHRLVSEGNVIGVRDLLSKAASVSSGDSVYRLLEAQNADGQTALHLACRRGCAELVQTILEYREANVDVLDKDGDPPLVFALAAGSPECVHAL IRSGANVRSRLREGFGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRALSKKYTDCAIAILENGGCRSMAFVNSKNLTPLHLSVATWSVAVV RRWVEVASQDDIAEAINIPSPVGTALCMAASSKKDHEIEGRQLVQILLAAGADPTSQDAPHGRTALHTASMANDVELVKIILDAGVDVNIRNMHNTIPLH VALARGAKSCVGILLNAGANCNIQDDEGDTAFHIAADAAKMIRENLEWLIIMLGNPNAAIEARNHRLVALTLRDYLETLPREWISEDLMEALLKREVHLS PTIYEAGDWVKFKRSLTTPAKGWQAAKHKSVGFVQTVVDKDNLVVSFCTGEAHVLASEVWKVIPLDRGQHVRLKADVKEPRFGWRGQLRDSIGTVLCVDD DGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPTLTTAKQLLLLSGYVKNLGVFFPNILLIGDRVCVKRSVAEPRYAWGGETHHSVGRVSEIEND GLLIIEIPNRPIPWQADPSDMEKVEDFKVGDWVKVKASVSSPIYGWEDVSRNSIGVIHSLEDDGNIGVAFCFRSKPFCCSVTDVEKVLPFELGQEVRVMA SVTQPRLGWSNESPATVGKIAKIDMDGTLNVMVAGRRGLWKMSPGDAERLSGFEVGDWVRSKPSLGTRPSYDWNTIGKESLAVVHSVQETGYLDLACCFR KGRWSTHYTDVEKVPSLKVGQHVRFRTGIVEPRWGWRGAQLDSRGIITSVHADGEVRVAFFGLSGLWRGDPADLEIEQMFEVGEWVRLGKDASNWKSIAP GCVGIVQGIGYDGDKWDGSTYVGFCGEQERWVGPTSHLERVERLVVGQKVRVKLSVKQPRFGWSGHSHGSLGTIAAIDADGKLRIYTPAGSKTWMLDPSE VELVEEDELGIGDWVRVRKSVATPTHQWGEVNHSSIGVVHRMQDGELWVAFCFMERLWLCKAWEMERLRPFEIGDKVRIRDGLITPRWGWGMETHTSKGE VVGVDANGKLRIKFQWREGRPWIGDPADIVVDES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10024136 [exp]	0	1
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10009830 [exp]	2.8	0.7802
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030817 [exp]	7.1	0.7867
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10018744 [exp]	9.3	0.8025
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10010955 [exp]	9.9	0.7576
AT5G23490			unknown protein		Lus10004286 [exp]	12.0	0.7583
AT3G50590			Transducin/WD40 repeat-like su...		Lus10009343 [exp]	19.4	0.7861
AT5G19400		SMG7	Telomerase activating protein ...		Lus10009689 [exp]	21.9	0.7475
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10042900 [exp]	21.9	0.7728
AT5G53460		GLT1	NADH-dependent glutamate synth...		Lus10019021 [exp]	22.3	0.7636
AT3G13290		VCR	varicose-related (.1)		Lus10039116 [exp]	27.1	0.7764

Compare expression of checked genes

Lus10024136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.