Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12600 199 / 8e-66 ATNUDT16 nudix hydrolase homolog 16 (.1.2) AT3G26690 123 / 8e-36 ATNUDX13, ATNUDT13 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, nudix hydrolase homolog 13 (.1.2) AT1G12880 122 / 2e-35 ATNUDT12 nudix hydrolase homolog 12 (.1) AT1G18300 106 / 5e-29 ATNUDT4 nudix hydrolase homolog 4 (.1) AT2G01670 103 / 3e-28 ATNUDT17 nudix hydrolase homolog 17 (.1) AT1G14860 103 / 3e-28 ATNUDT18 nudix hydrolase homolog 18 (.1) AT1G73540 97 / 2e-25 ATNUDT21 nudix hydrolase homolog 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026164 [exp] 246 / 1e-84 AT3G12600 221 / 1e-74 nudix hydrolase homolog 16 (.1.2) Lus10008660 [exp] 246 / 4e-84 AT3G12600 221 / 6e-74 nudix hydrolase homolog 16 (.1.2) Lus10001598 [exp] 101 / 2e-27 AT1G14860 252 / 1e-86 nudix hydrolase homolog 18 (.1) Lus10034598 [exp] 100 / 6e-27 AT1G14860 248 / 5e-85 nudix hydrolase homolog 18 (.1) Lus10021780 [exp] 99 / 2e-26 AT1G14860 244 / 2e-83 nudix hydrolase homolog 18 (.1) Lus10003713 [exp] 86 / 2e-21 AT1G14860 213 / 8e-71 nudix hydrolase homolog 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G194900 [exp] 241 / 7e-83 AT3G12600 226 / 2e-76 nudix hydrolase homolog 16 (.1.2) Potri.001G029500 [exp] 229 / 7e-78 AT3G12600 219 / 5e-74 nudix hydrolase homolog 16 (.1.2) Potri.016G036700 [exp] 157 / 5e-50 AT3G12600 159 / 8e-51 nudix hydrolase homolog 16 (.1.2) Potri.001G069200 [exp] 120 / 4e-35 AT1G12880 219 / 2e-73 nudix hydrolase homolog 12 (.1) Potri.003G161100 [exp] 121 / 9e-35 AT1G12880 213 / 4e-70 nudix hydrolase homolog 12 (.1) Potri.004G085600 [exp] 116 / 3e-33 AT1G14860 206 / 2e-68 nudix hydrolase homolog 18 (.1) Potri.015G035000 [exp] 117 / 6e-33 AT1G18300 195 / 2e-62 nudix hydrolase homolog 4 (.1) Potri.012G044300 [exp] 115 / 1e-32 AT1G18300 199 / 5e-65 nudix hydrolase homolog 4 (.1) Potri.017G131000 [exp] 113 / 4e-32 AT2G01670 223 / 6e-75 nudix hydrolase homolog 17 (.1) Potri.010G107300 [exp] 103 / 2e-28 AT2G01670 223 / 2e-75 nudix hydrolase homolog 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10024137 pacid=23141508 polypeptide=Lus10024137 locus=Lus10024137.g ID=Lus10024137.BGIv1.0 annot-version=v1.0 ATGTCTGATTTGGTAGCTCGGACTGGTCGACATCAGCAACGATACGAGGGCGGCTGTCGCCTTGTCGCTGGGTATAGGGATGACGATGGCGATATTGATG CCGGGAAGGTTGTTGAGGTTCTCATGATAAACTCCACCAGTGGGCCTGGTCTACTGTTCCCAAAGGGAGGGTGGGAGAATGATGAAACTGTTAAAGAGGC TGCAGCGAGAGAAGCTGTAGAAGAAGCTGGGGTTCGAGGTGATATACTGGATTTTATAGGGGATTATAACTTTAAGAGCAAGACTCACCAAGACGAAAGT TGCCCCGAAGGGTTGTGTAAAGCCGCCATGTTTGCCTTGTTAGTGAAAGAGGAGCTTGAGTCGTGGCCGGAGCAAAGCACTCGCAAGAGGAGTTGGCTTA TGATTCCTGAAGCAGTCGAGAGTTGCCGGCACAAATGGATGGAAGATGCTTTGAAGGATTTTGCGACATGGATTGATGATAAAGATGTAGTAAACTAG
AA sequence Show only first row Show all	>Lus10024137 pacid=23141508 polypeptide=Lus10024137 locus=Lus10024137.g ID=Lus10024137.BGIv1.0 annot-version=v1.0 MSDLVARTGRHQQRYEGGCRLVAGYRDDDGDIDAGKVVEVLMINSTSGPGLLFPKGGWENDETVKEAAAREAVEEAGVRGDILDFIGDYNFKSKTHQDES CPEGLCKAAMFALLVKEELESWPEQSTRKRSWLMIPEAVESCRHKWMEDALKDFATWIDDKDVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Lus10024137 [exp]	0	1
AT3G56370			Leucine-rich repeat protein ki...		Lus10025139 [exp]	16.4	0.8540
AT4G35930			F-box family protein (.1)		Lus10041876 [exp]	16.8	0.8588
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10017996 [exp]	17.9	0.8403
AT5G44500			Small nuclear ribonucleoprotei...		Lus10038421 [exp]	21.8	0.8409
AT5G16250			unknown protein		Lus10026857 [exp]	25.0	0.8489
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10025643 [exp]	26.8	0.8346
AT4G20940			Leucine-rich receptor-like pro...		Lus10023260 [exp]	32.1	0.8463
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Lus10001356 [exp]	32.2	0.8354
AT1G50660			unknown protein		Lus10040076 [exp]	38.1	0.8176
AT5G65630		GTE7	global transcription factor gr...		Lus10039630 [exp]	41.6	0.8235

Compare expression of checked genes

Lus10024137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.