Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33590 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G33600 383 / 7e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G76470 277 / 2e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 236 / 4e-76 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 218 / 4e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 217 / 9e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G15950 215 / 9e-68 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) AT1G09510 214 / 9e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G02400 213 / 3e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 211 / 2e-66 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012930 [exp] 366 / 9e-128 AT2G33590 360 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041651 [exp] 244 / 4e-79 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10024068 [exp] 243 / 1e-76 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10030973 [exp] 227 / 4e-72 AT1G15950 457 / 1e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10026385 [exp] 225 / 6e-72 AT5G58490 533 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035369 [exp] 223 / 9e-71 AT1G15950 456 / 6e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10019732 [exp] 220 / 9e-70 AT5G19440 349 / 3e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026273 [exp] 214 / 3e-67 AT2G02400 461 / 2e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042399 [exp] 211 / 2e-66 AT2G02400 457 / 7e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G257700 [exp] 407 / 4e-142 AT2G33590 400 / 4e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G004100 [exp] 404 / 5e-142 AT2G33590 438 / 1e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G004500 [exp] 322 / 1e-109 AT2G33590 364 / 2e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045000 [exp] 236 / 5e-76 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.003G181400 [exp] 232 / 2e-74 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045100 [exp] 232 / 3e-74 AT1G15950 483 / 9e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G045500 [exp] 227 / 2e-72 AT1G15950 505 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046100 [exp] 227 / 2e-72 AT1G15950 511 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.001G046400 [exp] 226 / 5e-72 AT1G15950 510 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.004G230900 [exp] 222 / 2e-70 AT2G02400 493 / 3e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10024138 pacid=23141444 polypeptide=Lus10024138 locus=Lus10024138.g ID=Lus10024138.BGIv1.0 annot-version=v1.0 ATGGATGCGACGGAAGGCAGAGTGTGTGTCACCGGCGCCAACGGATATCTGGGTTCTTGGGTTGTTCATCACCTCCTTTCCCACGACTACAACGTCCACG GAACCGTCAGAGACCCATCTGATCCAAAGTGTAGTCATTTGAAGGGACTTCCAAAGTCCTCTAATCTTAAGCTCTTAAAGGCGGATTTGCTAGATTATGA TTCTCTACGTTCGGCTATTGAAGGATGCAGCGGAGTGTTTCATGTGGCCAGTCCTGTTCCAGCCGCTTCTGTATCGAATCCTGAGGCTGAGGTAATAGAA CCAGCTGTGAAGGGCACCATAAATATACTTAAAGCATGTGTTGAAGCGAAGGTGAAGCGAGTTGTTTACGTTTCATCTGGAACAGCAGTATCCATGATCC CCAACTGGCCTAAGGATCAAGTTATGGACGAAACGTGTTGGTCTGATAAGGAATACTGCAGATCGATTCAGAACTGGTACCGTCTTTCCAAGACTGAAGC TGAAGGTCAGGCTTTTGAGTTTGCAAAAACTACTGGTCTAGACTTTGTTAGTGTTTGTCCTACTTTTATACTGGGACCAGTGCTGCAGCCGACAGTCAAT GCAAGTAGTCTTGTTCTTCTTAGGCTTCTAAAAGAAGGGCACGACTCGACAGGTAACCAGTCTCGCACCATGGTGGATGTCCGGGATGTGGCGCAAGCAT TGTTGTTGGCATACAAGAAAGCTGAAACACTAGGGAGATACATATGTTCAGCTCATGTGATATCGGCTCAGGAGATGATTGAGATACTCAAAGGGCTCTA TCCCAACTACAACTACCCTCAAAGCTTCATAGAGGGGGCAGAGAGGCTGGAGCTGAGTTCCCAGAAGTTGCAAAGACTGGGATGGAGTTACCGTCCGGTG CAGGAAACGCTAGTGGACTCTGTAGAGAGTTACAAAAAGGCTGGAATCTTGGACTAA
AA sequence Show only first row Show all	>Lus10024138 pacid=23141444 polypeptide=Lus10024138 locus=Lus10024138.g ID=Lus10024138.BGIv1.0 annot-version=v1.0 MDATEGRVCVTGANGYLGSWVVHHLLSHDYNVHGTVRDPSDPKCSHLKGLPKSSNLKLLKADLLDYDSLRSAIEGCSGVFHVASPVPAASVSNPEAEVIE PAVKGTINILKACVEAKVKRVVYVSSGTAVSMIPNWPKDQVMDETCWSDKEYCRSIQNWYRLSKTEAEGQAFEFAKTTGLDFVSVCPTFILGPVLQPTVN ASSLVLLRLLKEGHDSTGNQSRTMVDVRDVAQALLLAYKKAETLGRYICSAHVISAQEMIEILKGLYPNYNYPQSFIEGAERLELSSQKLQRLGWSYRPV QETLVDSVESYKKAGILD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33590			NAD(P)-binding Rossmann-fold s...		Lus10024138 [exp]	0	1
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	2.6	0.8909
AT1G78070			Transducin/WD40 repeat-like su...		Lus10041102 [exp]	5.7	0.8905
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	7.3	0.8755
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	8.7	0.8844
AT3G51390			DHHC-type zinc finger family p...		Lus10041837 [exp]	9.5	0.8886
AT1G01230			ORMDL family protein (.1)		Lus10005980 [exp]	10.4	0.8698
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10005749 [exp]	12.4	0.8489
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Lus10031177 [exp]	12.4	0.8573
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Lus10020027 [exp]	12.5	0.8871
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10041543 [exp]	13.0	0.8690

Compare expression of checked genes

Lus10024138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.