Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56710 59 / 2e-11 SIB1 sigma factor binding protein 1 (.1) AT2G41180 54 / 2e-09 SIB2 sigma factor binding protein 2, VQ motif-containing protein (.1) AT3G58000 42 / 3e-05 VQ motif-containing protein (.1) AT2G42140 40 / 0.0001 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039494 [exp] 252 / 6e-87 AT3G56710 56 / 3e-10 sigma factor binding protein 1 (.1) Lus10039493 [exp] 247 / 5e-85 AT3G56710 54 / 1e-09 sigma factor binding protein 1 (.1) Lus10026165 [exp] 73 / 5e-17 AT3G56710 44 / 3e-06 sigma factor binding protein 1 (.1) Lus10008659 [exp] 72 / 2e-16 ND 44 / 4e-06 Lus10038985 [exp] 49 / 3e-07 AT3G56710 54 / 3e-09 sigma factor binding protein 1 (.1) Lus10005523 [exp] 48 / 4e-07 ND 46 / 2e-06 Lus10027279 [exp] 47 / 1e-06 AT3G56710 46 / 2e-06 sigma factor binding protein 1 (.1) Lus10006569 [exp] 46 / 2e-06 ND 44 / 1e-05 Lus10022005 [exp] 44 / 5e-06 AT3G56710 48 / 1e-07 sigma factor binding protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G194700 [exp] 92 / 4e-24 AT3G56710 54 / 6e-10 sigma factor binding protein 1 (.1) Potri.001G029700 [exp] 89 / 4e-23 AT3G56710 54 / 5e-10 sigma factor binding protein 1 (.1) Potri.006G038900 [exp] 57 / 9e-11 AT2G41180 56 / 2e-10 sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.016G036600 [exp] 56 / 5e-10 AT3G56710 48 / 2e-07 sigma factor binding protein 1 (.1) Potri.013G043800 [exp] 50 / 3e-08 AT2G41180 / sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.016G093900 [exp] 50 / 5e-08 AT2G41180 / sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.019G013750 [exp] 47 / 3e-07 AT3G56710 46 / 7e-07 sigma factor binding protein 1 (.1) Potri.019G013300 [exp] 47 / 3e-07 AT2G41180 47 / 3e-07 sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.016G046000 [exp] 42 / 4e-05 AT3G58000 120 / 1e-34 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10024139 pacid=23141586 polypeptide=Lus10024139 locus=Lus10024139.g ID=Lus10024139.BGIv1.0 annot-version=v1.0 ATGGATTACGGACTTGGTGTTAACATGAAGAGCAGATCTGGTAGCTACAACAGGAAGGCAAGTACGAAGAGCAACAAGGACGTGAAAGTTGTGTACATCT CAACTCCTATGAAGGTGAAGACCAGCGCAGCTGAATTCAGAGCTTTGGTCCAGGAGCTCACCGGCAAGGACTCCGATACCGCCCGGCTCATGGAGGTCAA AGGGAACGAGGAGTTGATGATGATAAAGAAGAAGAAGAATAAGAAGAAGAGGAATGACACGGAAAGTACAGGAACAAGGGCAGATAATGAGTCATTGACG TCGTCATATGATGGTGACCATCATCATTCGTCGTCGCCGTTCATTCACCAGCAGCAAGAGTACTCCTCCACGTGTTCCGATTACTCGGCGTCTACGACGT CGTTGGATGAGCAGGAAGCGTTGATGTTGCCGATGGAGGGTAGCTTCATGAGCTTGTTTCAGCCCAATTTTTTGACTGAATTCAAACTCAACGAGATAGA TGAGTTGAACTATTGA
AA sequence Show only first row Show all	>Lus10024139 pacid=23141586 polypeptide=Lus10024139 locus=Lus10024139.g ID=Lus10024139.BGIv1.0 annot-version=v1.0 MDYGLGVNMKSRSGSYNRKASTKSNKDVKVVYISTPMKVKTSAAEFRALVQELTGKDSDTARLMEVKGNEELMMIKKKKNKKKRNDTESTGTRADNESLT SSYDGDHHHSSSPFIHQQQEYSSTCSDYSASTTSLDEQEALMLPMEGSFMSLFQPNFLTEFKLNEIDELNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10024139 [exp]	0	1
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10001265 [exp]	2.4	0.9277
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039494 [exp]	2.4	0.8800
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10004752 [exp]	3.0	0.8670
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10012215 [exp]	3.5	0.9154
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	5.0	0.8837
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10024643 [exp]	5.2	0.9099
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10034630 [exp]	7.2	0.8333
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10023838 [exp]	8.9	0.8556
AT1G13570			F-box/RNI-like superfamily pro...		Lus10028368 [exp]	10.5	0.7519
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10026082 [exp]	11.7	0.8738

Compare expression of checked genes

Lus10024139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.