Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12250 476 / 3e-170 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06950 461 / 2e-164 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT5G06960 431 / 1e-152 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G68640 353 / 4e-120 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT1G08320 316 / 8e-107 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G06839 314 / 3e-105 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT5G10030 290 / 1e-96 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT1G22070 290 / 5e-96 bZIP TGA3 TGA1A-related gene 3 (.1) AT5G65210 277 / 3e-92 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT1G77920 279 / 4e-92 bZIP bZIP transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008658 [exp] 536 / 0 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10026166 [exp] 527 / 0 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10041475 [exp] 349 / 8e-118 AT1G68640 444 / 4e-153 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10034296 [exp] 325 / 1e-108 AT1G68640 427 / 1e-146 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10004876 [exp] 326 / 3e-108 AT1G08320 635 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10020610 [exp] 321 / 3e-106 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10023822 [exp] 315 / 2e-104 AT5G06839 491 / 2e-171 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10043387 [exp] 297 / 3e-98 AT1G08320 481 / 7e-168 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10019543 [exp] 292 / 7e-96 AT1G08320 508 / 5e-178 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G029800 [exp] 521 / 0 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.003G194600 [exp] 518 / 0 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.006G039000 [exp] 470 / 1e-165 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.016G036500 [exp] 466 / 2e-164 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.008G118300 [exp] 408 / 1e-141 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.006G058800 [exp] 343 / 3e-115 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.016G049200 [exp] 326 / 9e-109 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.004G203400 [exp] 325 / 2e-108 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.009G164300 [exp] 320 / 2e-106 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.007G085700 [exp] 295 / 2e-98 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10024140 pacid=23141537 polypeptide=Lus10024140 locus=Lus10024140.g ID=Lus10024140.BGIv1.0 annot-version=v1.0 ATGGCTGATACCAGCCCTAGGACAGACTCAGGGGACGCTGACTCAGATGAGCAAAGTCCAGGGTTTGATCGAGGTCTGTCAGGAGTCGTAGCTGCTTCAG AGTCCAGTGATAGATCGAAAGATAAAATGGATCAAAAGACACTCCGAAGACTTGCTCAAAACAGAGAAGCTGCAAGAAAAAGCCGGCTTAGGAAGAAAGC ATATGTGCAACAGCTGGAAAGTAGTCGGTTGAAGTTGACCCAACTAGAGCAGGAGCTTCAACGAGCGCGTCAACAGGGGATCTTTATTTCAAGCTCAGGA GACCAAGCCCATTCAATGGGTGGAAATGGGGCTATGGCATTTGACGTAGAGTATGCAAGATGGCTGGAAGAGCAAAATAAACAAATAAATGAGTTGAGAG CAGCAGTAAACTCTCATGCTGGAGATACAGAACTTAGGATAATCATTGACGGTATAATGGCTCACTATGATGAAATATTTAGGCTGAAGAGCAATGCAGC CAAGGCTGATGTTTTCCATTTGCTGTCTGGCATGTGGAAGACGCCTGCTGAGAGATGTTTTCTTTGGCTTGGCGGCTTCCGTTCTTCTGAACTCCTCAAG CTTTTAGTAAACCAGTTGGAGCCACTGACGGAGCAGCAGTTGGTAGGGCTTACGAACTTGCAGCAGTCATCACAACAGGCCGAAGATGCTCTATCTCAGG GAATGGAAGCGTTACAGCAATCCTTAGCCGAAACATTATCAAGCGGTACTCAACCCGGATCCTCAGGCACATCCGGAAATGTAGCAAACTACATGGGTCA GATGGCCATGGCAATGGGGAAGCTTGGGACCTTGGAGGGGTTTATTCGCCAGGCGGACAACTTACGACAGCAGACTCTACAACAGATGCACAGAATACTA ACGACGAGACAATCAGCAAGGGCGCTGCTTGCGATCCATGATTACTTGTCTCGATTACGAGCGCTTAGTTCCCTTTGGCTCGCCAGACCGAGAGAGTGA
AA sequence Show only first row Show all	>Lus10024140 pacid=23141537 polypeptide=Lus10024140 locus=Lus10024140.g ID=Lus10024140.BGIv1.0 annot-version=v1.0 MADTSPRTDSGDADSDEQSPGFDRGLSGVVAASESSDRSKDKMDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSG DQAHSMGGNGAMAFDVEYARWLEEQNKQINELRAAVNSHAGDTELRIIIDGIMAHYDEIFRLKSNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLK LLVNQLEPLTEQQLVGLTNLQQSSQQAEDALSQGMEALQQSLAETLSSGTQPGSSGTSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRIL TTRQSARALLAIHDYLSRLRALSSLWLARPRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	0	1
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10016999 [exp]	1.0	0.9636
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10041418 [exp]	2.0	0.9584
AT1G55680			Transducin/WD40 repeat-like su...		Lus10035667 [exp]	2.0	0.9602
AT3G14075			Mono-/di-acylglycerol lipase, ...		Lus10015680 [exp]	2.4	0.9520
AT2G44140			Peptidase family C54 protein (...		Lus10025609 [exp]	3.7	0.9443
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10025884 [exp]	4.2	0.9470
AT3G10915			Reticulon family protein (.1.2...		Lus10034224 [exp]	4.5	0.9535
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	4.6	0.9594
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10041016 [exp]	4.7	0.9464
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10026166 [exp]	5.1	0.9445

Compare expression of checked genes

Lus10024140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.