Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55010 435 / 2e-149 EMB2818, ATPURM, PUR5 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040931 [exp] 546 / 0 AT3G55010 532 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) Lus10009823 [exp] 517 / 0 AT3G55010 522 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) Lus10039497 [exp] 461 / 5e-161 AT3G55010 489 / 4e-175 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198600 [exp] 482 / 5e-168 AT3G55010 526 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) Potri.014G123000 [exp] 475 / 4e-165 AT3G55010 520 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02769 [flax] [poplar] AIRS_C AIR synthase related protein, C-terminal domain PF00586 [flax] [poplar] AIRS AIR synthase related protein, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10024142 pacid=23141470 polypeptide=Lus10024142 locus=Lus10024142.g ID=Lus10024142.BGIv1.0 annot-version=v1.0 ATGAAATTAGCAAAGAAGGCAGTTTTGGGGGCAGTAGTTTCCTACTTAATCATATTGGGGAAGTTTGATGATGAGGTGATGGTGGTATCAGCTGATGCCT ACTCCGAAGCAGACTTCTATGCCCTCTGTAGCGACACAGCTGCAGGTGATTTCAGGAGAGTACAAGCCACTGAAGCGGCGTTTCAAAAGCTGTGGTTGCT TGTCTCCGGAGGAATATACAATCTGTGCGTGTCTTATACCATCGTTCCAGAACCCATTTACACCCAGTTCGTGGAAGCACTCTGCCGTACAGATCTGATC GACGTCAACTGCAACGACTGCCTGTTTGTAGCCGACGGGTTCCTGCAATCTAGCTGTATTTACAAGCTTGGGGGTCAGGTTCATCATTACTCCGGCCACT GCCACCTTAGAGCAGCCACCGGTCCCGGAGCACTGCCACTGTCACTCCTCCCTCCGGCCGCCGCTCCCTCTCTCCTCCGCTTCTCTTCTCTCAATCACCG GCCACTTCCGCCAACCTCACCTCATCCTGGTTATGCTCCTATCTCTCCCGTAACTGCTTCTCTTCTGCCAAGACTACTTCTAAAGGAGTCCGACCTCTAC ATCCACCGCCGCCAGAAAACCATGACTGCTGTCAACGTAGAGTCAACCCGAGCTATCGGAGCATCTATTAGACAATTCTCGACCAAACTCGGCGTTGCTC ATCCGACCATACTTAGGTGTACGTTTAACAGTTCCTTCAATGGAAGATCGCTCCAAGCAACAAATGTCGCTGCATCTGTAGCTAAAAGAAGACTCAATGG AATCAGGGATGAGTCTGGTGGACTTACTTACAAGGATGCTGGTGTAGATATTGATGCTGGGTCCGAACTTGTCAAGCGGATTGCAAAGATGGCTCCTGGA ATTGGAGGTTTTGGGGGTCTTTTCCCCCTTGGGGATTCATATCTCGTTGCTGGTACAGATGGTGTTGGTACCAAACTGAAACTTGCATTTGAGACAGGAA TCCACGATACGATTGGAGTTGATTTGGTTGCGATGAGTGTCAATGACATAGTTACTTCAGGTGCAAAGCCACTCTTCTTTCTTGATTACTTTGCAACTAG CCGCCTTGATGTTGACCTGGCCGAAAAGGTTATTAGAGGCATCGTAGATGGCTGCCAGCAATCTGATTGCACACTTTTGGGAGGAGAGACTGCAGAGATG CCAGATTTCTACGCTGATGGCGAATATGATCTCAGTGGATTTGCAGTCGGCATTGTGAAAAACGACTCGGTTATTTGTTGGAAGAAAAATTTTGGAGGGG GTGGTTTTATTTGGTGTTCATCCCGCGGCGTTCATTGTAGTCTAATTGCACCTACTGTTATATATGTGAAGCAGGTGCTTGACATAATTAGCAAGGGAGG CGTTAAGGGCATAGCCCACATTACAGGAGGTGGTTTTACAGATAACATACCCAGGGTATTCCCAAAGGGGCTTGGAGCTGCTATTTACAACAACTCGTGG GAAATTCCACCCGTCTTTAAATGGATCCAAGAGGCGGGAAACATAGAGGATGCAGAGATGAGACGAACCTTCAACATGGGAATTGGGATGGTTTTAGTGG TGACAAAGGAAGCAGGTAGAAGAATAATCGAGGATGGACAACACAAGGCGTATCAGATTGGGGAGGTTGTTGGTGCTGAAGGAGTGAGCTATCTATGA
AA sequence Show only first row Show all	>Lus10024142 pacid=23141470 polypeptide=Lus10024142 locus=Lus10024142.g ID=Lus10024142.BGIv1.0 annot-version=v1.0 MKLAKKAVLGAVVSYLIILGKFDDEVMVVSADAYSEADFYALCSDTAAGDFRRVQATEAAFQKLWLLVSGGIYNLCVSYTIVPEPIYTQFVEALCRTDLI DVNCNDCLFVADGFLQSSCIYKLGGQVHHYSGHCHLRAATGPGALPLSLLPPAAAPSLLRFSSLNHRPLPPTSPHPGYAPISPVTASLLPRLLLKESDLY IHRRQKTMTAVNVESTRAIGASIRQFSTKLGVAHPTILRCTFNSSFNGRSLQATNVAASVAKRRLNGIRDESGGLTYKDAGVDIDAGSELVKRIAKMAPG IGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHDTIGVDLVAMSVNDIVTSGAKPLFFLDYFATSRLDVDLAEKVIRGIVDGCQQSDCTLLGGETAEM PDFYADGEYDLSGFAVGIVKNDSVICWKKNFGGGGFIWCSSRGVHCSLIAPTVIYVKQVLDIISKGGVKGIAHITGGGFTDNIPRVFPKGLGAAIYNNSW EIPPVFKWIQEAGNIEDAEMRRTFNMGIGMVLVVTKEAGRRIIEDGQHKAYQIGEVVGAEGVSYL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10024142 [exp]	0	1
AT1G65030			Transducin/WD40 repeat-like su...		Lus10038299 [exp]	2.4	0.9435
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10032591 [exp]	2.8	0.9512
AT5G15780			Pollen Ole e 1 allergen and ex...		Lus10005086 [exp]	4.5	0.9212
AT4G11010		NDPK3	nucleoside diphosphate kinase ...		Lus10032392 [exp]	4.6	0.9267
AT5G25500			unknown protein		Lus10002897 [exp]	4.9	0.9183
AT5G09380			RNA polymerase III RPC4 (.1)		Lus10019022 [exp]	5.3	0.9172
AT4G00585			unknown protein		Lus10012175 [exp]	7.3	0.9153
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10039497 [exp]	7.5	0.9255
AT5G25940			early nodulin-related (.1)		Lus10019434 [exp]	7.5	0.9426
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10006032 [exp]	8.0	0.9392

Compare expression of checked genes

Lus10024142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.