Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54390 172 / 2e-50 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G10030 87 / 3e-18 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G14180 82 / 7e-17 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT3G24860 72 / 8e-14 Trihelix Homeodomain-like superfamily protein (.1) AT3G58630 66 / 7e-12 Trihelix sequence-specific DNA binding transcription factors (.1) AT5G05550 63 / 4e-11 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G11100 61 / 2e-10 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G54060 62 / 3e-10 Trihelix ASIL1 6B-interacting protein 1-like 1 (.1) AT2G44730 61 / 4e-10 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G24490 59 / 2e-09 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039500 [exp] 253 / 6e-78 AT1G08315 383 / 2e-129 ARM repeat superfamily protein (.1) Lus10007273 [exp] 80 / 2e-16 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10008141 [exp] 77 / 3e-15 AT3G14180 271 / 3e-87 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 72 / 1e-14 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10013179 [exp] 75 / 2e-14 AT3G14180 256 / 5e-81 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 73 / 3e-14 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025406 [exp] 72 / 5e-14 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10020652 [exp] 73 / 1e-13 AT5G16860 344 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040141 [exp] 64 / 5e-11 AT2G44730 123 / 1e-31 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G028400 [exp] 172 / 4e-50 AT3G54390 297 / 6e-100 sequence-specific DNA binding transcription factors (.1) Potri.003G195300 [exp] 169 / 9e-49 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 80 / 1e-16 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.008G027000 [exp] 79 / 7e-16 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.001G026000 [exp] 79 / 7e-16 AT3G14180 186 / 1e-54 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.010G233500 [exp] 78 / 2e-15 AT3G10030 434 / 3e-148 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.001G113600 [exp] 75 / 7e-15 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.006G117300 [exp] 76 / 1e-14 AT3G10030 591 / 0.0 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.008G071300 [exp] 72 / 4e-14 AT5G05550 209 / 3e-67 sequence-specific DNA binding transcription factors (.1.2) Potri.T126206 [exp] 69 / 2e-12 AT3G14180 173 / 9e-50 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024143 pacid=23141454 polypeptide=Lus10024143 locus=Lus10024143.g ID=Lus10024143.BGIv1.0 annot-version=v1.0 ATGGATAAGGAGACAACTCACCACCACGACGACGATTCTCCCAGGAAACTGCAATCCATCGCCGGCGGTGGTGATCGGTTGAAGAGAGATGAGTGGAGCG AAGGGGCTGTCTCCAGCTTACTGGAGGCCTACGAGACCAAGTGGGTGCTTCGGAACCGAGCCAAGCTCAAGGGCCAGGACTGGGAAGACGTGGCTAGGTT CGTCTCTTCCCGAGCCAACTCCACCCGGGCCCCCAAGACCCAGACCCAATGCAAGAACAAGATCGAGTCCATGAAGAAACGCTACCGTTCTGAGTCTGCC GCCGGTGACGCCTCCTCCTCCTGGCCGCTTTATCACCGTCTCCACCACTTGCTCCGCGGTAGTGCTACTACTACTCCTGCTTCCGTACCACTTTCTCATC CGCTCCCGCCGGCGGAACCGTTATTGTCTCCCACCGCCGTATTCTCGTCGTCGTCGTCGTCGCGACAAGTACAGAATCAGCATCTCCATCATCAACGTCA TCTTCCTCCTCCTCCCTTGTTGTTGCTGGAACCGTCGCCGGGAAACAGTACTCTGTTGTCTCCGCCGGCACACAGTACTCTGTTGCAGCAGACGCCGGGG CAGCTGCAGCAGAAACTTCCACCGCCGATGCCTCCTCAACCTACGCCGGTAACAATGATCGTCAGTCCTCTTCCTACACCATCGCCGGCTGCGATCACTG GGACGGCGGCTCAAAATTCACATGGGTCCGATGGTGTGGACAGAGTAGGTGGAAAGGAAGAAGTAAAAAGAATACCTGGTGGTGGAGGGAAATTGTCGCC GGAGCATGTACCAGACAAGAACACCAATGCGGCGGCAATGGACGACACAGACAGCAGCACCCCGGCACAGGTGTACAGCGAGACCAAGGAGACGAACAAG AAGTTTGGGACGACAAAGTCGAATCGGGCGAAGAAGATGAAGAGGAAGGGGGGCAGCGGATCGGAAAGGAGGAGATCATCATCGGAGTACTGGGAGATAG CAGAGAGCATAAGGTGGATGGCGGAGGTGGTGGTGAGGTCGGAGCAGGCAAGGATGGAAACAATGAAGGAAGTTGAGAAGATGAGGATCGAAGCAGATGC TAAGAGAGGGGAGATTGAGTTGAAGAGAACTGAGATTTTGGCTAATACTCAGCTGGAAATCGCCAAGCTCTTTGCAGCTGGTTTGACCAAATCCGGCCGG TCAACGGTCGATTCTTCCTTACGGATTGGGAGAAATTGA
AA sequence Show only first row Show all	>Lus10024143 pacid=23141454 polypeptide=Lus10024143 locus=Lus10024143.g ID=Lus10024143.BGIv1.0 annot-version=v1.0 MDKETTHHHDDDSPRKLQSIAGGGDRLKRDEWSEGAVSSLLEAYETKWVLRNRAKLKGQDWEDVARFVSSRANSTRAPKTQTQCKNKIESMKKRYRSESA AGDASSSWPLYHRLHHLLRGSATTTPASVPLSHPLPPAEPLLSPTAVFSSSSSSRQVQNQHLHHQRHLPPPPLLLLEPSPGNSTLLSPPAHSTLLQQTPG QLQQKLPPPMPPQPTPVTMIVSPLPTPSPAAITGTAAQNSHGSDGVDRVGGKEEVKRIPGGGGKLSPEHVPDKNTNAAAMDDTDSSTPAQVYSETKETNK KFGTTKSNRAKKMKRKGGSGSERRRSSSEYWEIAESIRWMAEVVVRSEQARMETMKEVEKMRIEADAKRGEIELKRTEILANTQLEIAKLFAAGLTKSGR STVDSSLRIGRN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54390	Trihelix		sequence-specific DNA binding ...		Lus10024143 [exp]	0	1
AT4G38660			Pathogenesis-related thaumatin...		Lus10028447 [exp]	2.4	0.9039
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Lus10040694 [exp]	2.4	0.9173
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10018915 [exp]	2.8	0.9269
AT1G64450			Glycine-rich protein family (....		Lus10003189 [exp]	3.7	0.9019
AT5G25280			serine-rich protein-related (....		Lus10038100 [exp]	4.5	0.9077
AT2G46630			unknown protein		Lus10030217 [exp]	6.5	0.9183
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10007774 [exp]	8.5	0.8889
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004926 [exp]	10.8	0.8875
AT3G22550			Protein of unknown function (D...		Lus10010568 [exp]	11.0	0.8777
AT4G18340			Glycosyl hydrolase superfamily...		Lus10028122 [exp]	11.7	0.9083

Compare expression of checked genes

Lus10024143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.