Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08315 383 / 7e-134 ARM repeat superfamily protein (.1) AT2G23140 122 / 6e-31 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 110 / 8e-27 ARM repeat superfamily protein (.1) AT1G23030 108 / 4e-26 PUB11 ARM repeat superfamily protein (.1) AT3G54850 105 / 5e-25 ATPUB14 plant U-box 14 (.1) AT1G71020 104 / 7e-25 ARM repeat superfamily protein (.1.2) AT3G46510 97 / 6e-22 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54790 91 / 5e-20 ARM repeat superfamily protein (.1.2) AT1G29340 88 / 5e-19 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT5G42340 83 / 2e-17 PUB15 Plant U-Box 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039500 [exp] 559 / 0 AT1G08315 383 / 2e-129 ARM repeat superfamily protein (.1) Lus10008655 [exp] 489 / 1e-175 AT1G08315 393 / 5e-138 ARM repeat superfamily protein (.1) Lus10026170 [exp] 151 / 7e-46 AT1G08315 106 / 6e-29 ARM repeat superfamily protein (.1) Lus10006007 [exp] 147 / 1e-43 AT1G08315 111 / 8e-30 ARM repeat superfamily protein (.1) Lus10017444 [exp] 124 / 3e-31 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10007511 [exp] 121 / 3e-30 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10037970 [exp] 116 / 1e-28 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10024899 [exp] 111 / 6e-27 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10022919 [exp] 110 / 2e-26 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G028300 [exp] 435 / 1e-154 AT1G08315 343 / 3e-118 ARM repeat superfamily protein (.1) Potri.003G195400 [exp] 420 / 9e-149 AT1G08315 364 / 1e-126 ARM repeat superfamily protein (.1) Potri.008G035700 [exp] 127 / 8e-33 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 120 / 4e-30 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.005G144700 [exp] 117 / 6e-29 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 115 / 2e-28 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.010G185900 [exp] 112 / 2e-27 AT3G46510 335 / 2e-105 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 110 / 1e-26 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G071600 [exp] 109 / 2e-26 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 108 / 3e-26 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10024145 pacid=23141436 polypeptide=Lus10024145 locus=Lus10024145.g ID=Lus10024145.BGIv1.0 annot-version=v1.0 ATGGAGGTGAAGCGAAGAAGCATACGCACGCTAGTCACAAAGCTCAGCTCGGTTTCGGAGCGGACACGGGAAGAGTCATTAGCAGAGCTCCGACTCATCA CCAAGCACGACGAAGAAAGCCGCCCGATCGCCGCTGAAGCAGGGGCCATCCCTTATTTGGCAGAGACTCTCTACTCTTCTTCCCACGAATCTCAGGAAAA CGCCGCCGCTACTCTCCTCAACATCTCAATCTCCTCCCGCGACTCTCTCATGTCCACCCGGGGTTTACTCGACGCGCTATCCCACGCGCTCCGCCACCAC TCCACCACCACTCCCCCGACCGCGGTCCAGTCCGCCGCCGCCACGCTGCACAGCCTGCTGGTAATCGATTCCTACCGCCCAATTATCGGATCAAAGAGGG ACATCCTGTACTCGCTGATCGAGATCGTGAAGAGCCCCAAATCTCCGCCGCGGTCGATCAAGGACGCGCTGAAGGCCATGTTCGGGATCGCTCTGTACCA GCTGAACCGGTCCACGATGATCGACTTGGGAGCGGTTCCGCCGCTGTTCTCGCTGGTGGTGAAGGACGGGAGGGTGGGGATCGTGGAGGACGCGACGGCG GTGATCGCTCAGATAGCCGGATGCGAGGAGAGCGAGGCGGAATTCGGGAGGGTGTCGGGAATAAGGGTATTGGTGGATCTGTTGGACGTGGGGACTGGAT CGAGCGATAGGGTGAAGGAGAACGCGGTGGGAGCGTTGCTGAATCTGGTGAGGAGTGGAGGTGAGAAAGTAGGGGGAGAGGTGAAGGAATTGGGAGCTTA CGTAGTGGAAGGAATTAGACAAGTTGGGGAGAGAGGGAGCTCGAAAGGGAAGAGTAAAGCCATAGATTTGCTGGAAGTGATCGAAGGAGGATCTATGGAT GGGAATGTGCAATTCTATACCATGTTCGATCATCATCATCACTCCTCAGATTGA
AA sequence Show only first row Show all	>Lus10024145 pacid=23141436 polypeptide=Lus10024145 locus=Lus10024145.g ID=Lus10024145.BGIv1.0 annot-version=v1.0 MEVKRRSIRTLVTKLSSVSERTREESLAELRLITKHDEESRPIAAEAGAIPYLAETLYSSSHESQENAAATLLNISISSRDSLMSTRGLLDALSHALRHH STTTPPTAVQSAAATLHSLLVIDSYRPIIGSKRDILYSLIEIVKSPKSPPRSIKDALKAMFGIALYQLNRSTMIDLGAVPPLFSLVVKDGRVGIVEDATA VIAQIAGCEESEAEFGRVSGIRVLVDLLDVGTGSSDRVKENAVGALLNLVRSGGEKVGGEVKELGAYVVEGIRQVGERGSSKGKSKAIDLLEVIEGGSMD GNVQFYTMFDHHHHSSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08315			ARM repeat superfamily protein...		Lus10024145 [exp]	0	1
AT4G29850			Eukaryotic protein of unknown ...		Lus10019737 [exp]	1.0	0.8874
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10024177 [exp]	5.7	0.8412
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10013186 [exp]	6.2	0.8423
AT3G06240			F-box family protein (.1)		Lus10037892 [exp]	7.0	0.8284
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10000940 [exp]	7.7	0.8549
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10039143 [exp]	7.7	0.7587
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10037448 [exp]	8.1	0.8382
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039562 [exp]	9.8	0.8360
AT5G10530			Concanavalin A-like lectin pro...		Lus10029553 [exp]	9.9	0.8253
AT5G17280			unknown protein		Lus10028356 [exp]	13.0	0.8113

Compare expression of checked genes

Lus10024145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.