Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07030 461 / 9e-163 Eukaryotic aspartyl protease family protein (.1) AT3G54400 447 / 1e-157 Eukaryotic aspartyl protease family protein (.1) AT1G09750 314 / 9e-105 Eukaryotic aspartyl protease family protein (.1) AT3G61820 160 / 3e-45 Eukaryotic aspartyl protease family protein (.1) AT1G01300 157 / 4e-44 Eukaryotic aspartyl protease family protein (.1) AT3G20015 151 / 7e-42 Eukaryotic aspartyl protease family protein (.1) AT1G25510 151 / 8e-42 Eukaryotic aspartyl protease family protein (.1) AT3G18490 145 / 1e-39 Eukaryotic aspartyl protease family protein (.1) AT5G10770 141 / 4e-38 Eukaryotic aspartyl protease family protein (.1) AT1G79720 139 / 2e-37 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039503 [exp] 615 / 0 AT3G54400 477 / 3e-169 Eukaryotic aspartyl protease family protein (.1) Lus10008654 [exp] 485 / 3e-172 AT3G54400 563 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10026171 [exp] 447 / 1e-157 AT5G07030 494 / 4e-174 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 167 / 7e-48 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 145 / 2e-39 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 136 / 1e-35 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 135 / 1e-35 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10042426 [exp] 134 / 1e-35 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 130 / 4e-34 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G028200 [exp] 512 / 0 AT3G54400 542 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G195500 [exp] 506 / 1e-180 AT3G54400 559 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G104600 [exp] 353 / 4e-120 AT1G09750 531 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 163 / 4e-46 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 162 / 7e-46 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 158 / 2e-44 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 156 / 2e-43 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 154 / 4e-43 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 143 / 7e-39 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 140 / 2e-37 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10024148 pacid=23141584 polypeptide=Lus10024148 locus=Lus10024148.g ID=Lus10024148.BGIv1.0 annot-version=v1.0 ATGATGATGGCTCTTGATACCAGCAGTGATGCTGCTTGGATCCCTTGCAATGGCTGTGTTGGTTGTTCTTCCTCTGTTTTCAACTCCCTCAAGTCCATTT CCTTCAAATCCCTTGGCTGCCACTCCTCTCAATGCCACCAGGTACCCAACCCCACATGTGGCGGCAGCGCGTGTGTCTTCAACATGACTTACGGCAGCTC TTCTATCGCAGCCAATCTGTCCTCCGACACCTTCAAACTCGCCGCCGACCCCATCCCAAGCTACACATTCGGCTGCATCCAGAAGGCCACCGCAAGCTCT GTTCCGCCGCAGGGGCTCTTGGGCTTGGGCCGAGGCCCTCTATCCTTCCTCTCCCAGACTCAAAACCTTTACAAATCAACTTTCTCCTATTGCCTACCCA GCTTCAGGTCACTCAACTTCTCTGGATCGTTGAAGCTCGGCCCTGTAGCCCAGCCCATTAGGATCAAGTACACCCCGTTGCTCAAGAATCCGAGGAGATC ATCTCTGTACTATGTGAATCTCATCGCCATTAAGGTCGGCCGCAAAATTGTTGACATCCCCGCCGGTTCTTTGGCGTTCAACCCCACCACCGGTGCCGGC ACAATCATAGATTCCGGCACGGTGTTCACCAGGCTGGTGACGCCAGTGTACACGGCGGTGAGGGACGAGTTCCGGAGGCGCGTGGGAAGGAAGGTGACGG TGACATCCCTTGGTGGGTTCGACACGTGCTACTCAACCGCCATTGTGCCACCCACAATCACGTTCATGTTCGCAGGGATGAACGTGACGCTGCCGGCGGA TAACATCATGATTCACAGCACTGCTGGGAGCACGGCGTGCCTGGCAATGGCGGCTGCACCCGACAACGTGAACTCGGTGGTCAACGTCATCGCCAACATG CAGCAGCAGAACCACAGGATCCTGATCGACGTGCCAAACTCTAGGATTGGGGTGGCGCGTGAGCAATGCTCGTGA
AA sequence Show only first row Show all	>Lus10024148 pacid=23141584 polypeptide=Lus10024148 locus=Lus10024148.g ID=Lus10024148.BGIv1.0 annot-version=v1.0 MMMALDTSSDAAWIPCNGCVGCSSSVFNSLKSISFKSLGCHSSQCHQVPNPTCGGSACVFNMTYGSSSIAANLSSDTFKLAADPIPSYTFGCIQKATASS VPPQGLLGLGRGPLSFLSQTQNLYKSTFSYCLPSFRSLNFSGSLKLGPVAQPIRIKYTPLLKNPRRSSLYYVNLIAIKVGRKIVDIPAGSLAFNPTTGAG TIIDSGTVFTRLVTPVYTAVRDEFRRRVGRKVTVTSLGGFDTCYSTAIVPPTITFMFAGMNVTLPADNIMIHSTAGSTACLAMAAAPDNVNSVVNVIANM QQQNHRILIDVPNSRIGVAREQCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54400			Eukaryotic aspartyl protease f...		Lus10024148 [exp]	0	1
AT5G43020			Leucine-rich repeat protein ki...		Lus10024803 [exp]	2.0	0.9459
AT5G58930			Protein of unknown function (D...		Lus10040700 [exp]	4.0	0.9084
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10002854 [exp]	6.7	0.8970
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10026880 [exp]	8.1	0.9278
AT4G28310			unknown protein		Lus10018597 [exp]	12.4	0.8907
AT1G16630			unknown protein		Lus10006845 [exp]	16.3	0.9119
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039168 [exp]	19.6	0.9042
AT5G41460			Protein of unknown function (D...		Lus10028768 [exp]	20.1	0.8615
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10017996 [exp]	20.6	0.8719
AT1G70340			Plant protein of unknown funct...		Lus10029158 [exp]	21.7	0.9080

Compare expression of checked genes

Lus10024148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.