Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69550 173 / 1e-44 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G17680 159 / 6e-40 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G46470 155 / 9e-39 RPS6 RESISTANT TO P. SYRINGAE 6, disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 150 / 3e-37 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 149 / 9e-37 disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27180 149 / 1e-36 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 148 / 1e-36 TAO1 target of AVRB operation1 (.1) AT3G44480 142 / 9e-35 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 140 / 4e-34 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 140 / 4e-34 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010223 [exp] 1016 / 0 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10015648 [exp] 841 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10017420 [exp] 753 / 0 AT1G69550 164 / 1e-42 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10001537 [exp] 717 / 0 AT5G44510 175 / 1e-45 target of AVRB operation1 (.1) Lus10010221 [exp] 631 / 0 AT5G17680 369 / 4e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10017418 [exp] 612 / 0 AT5G44510 335 / 1e-96 target of AVRB operation1 (.1) Lus10018021 [exp] 489 / 1e-157 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10042778 [exp] 444 / 5e-146 AT4G12010 185 / 1e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015650 [exp] 438 / 2e-142 AT4G12010 346 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068300 [exp] 261 / 2e-74 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 253 / 1e-71 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 216 / 5e-59 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G113701 [exp] 216 / 9e-59 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 206 / 2e-55 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 204 / 7e-55 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 204 / 7e-55 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 201 / 9e-54 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097800 [exp] 199 / 4e-53 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 197 / 7e-53 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024150 pacid=23141475 polypeptide=Lus10024150 locus=Lus10024150.g ID=Lus10024150.BGIv1.0 annot-version=v1.0 ATGTCTACCATGCACCCCGCTTCTCTGGTCAAGGTGGAGGATTTAATTGATAGATCCCTCTTAACTTGTGTTTCTGACGAGAAGATTGAGGTGCATGATC TACCTAAGGAGATGGCTTGGAATATCGTCAATGGAGAACCAAAGCTTGGCAAACGCAGCAGGATAACGGATCCTGATGATATTCGTAAATTGCTTAGAGT TCGAGATGTTCACAAGTTATCAACAACTTCAGAAGTGAAAAATTGGAGTACATCATTTCTCGACTTCTGCAAAAGCATAGTAATGGCGGTCTCGCCAAAA GTAAAGAGAAGACAAATCGTTGACATGTATCGGAAAGGGAAAGATCCATTGGAGGAGCATAGAACTACGGAAGGTATACATTTGGATCTTTCGAATGCGA AAGAGATGTATTTGGAAGCCGATACCTTTGATGGGATGAATTCTCTTACCTTTCTCAAGTTTGAGGACCCTGACATTTCAGAAAATATGAAGAAAAACAG ACTTCATTTTCCTTATAGTGGACTCAGCTCACTTCCTGACGGGTTGAGATGGCTGCAGTGGGATAGATATCCTTCCAAATATCTACCATCAAGTTTTCTC CCTCAACACCTTGTCCATCTCATTATACGTAACAGTCCGATTCAAAGATGCTGGGAAGCACACGATCAACCCCAACTTGTGAACTTGTTGGTGCTTAATC TCTCCTACTGCAGAAATCTAATCGTTATTCCAAATATATCAAGTTCTTCAAAACTTGAAAAACTTGTCCTTTTTAAATGTGAAAGCCTAGTTGAGGTACC TTCTTATGTTCAATACTTGACCAAGTTGATAAAATTGGAGCTCAGTTATTGTCGAAACCTCGAGCGTCTTCCGCCTAAACTGGACTCGAAGTTGCTTAAG CATGTTAAGATGACGAGATGTCTGAATGTCACGCACTGCCCAGAGATTATTTCAAAAGACCTGGAAGATTTTGATTTATATGGGACGTCCCTCATAGAGC TACCCAGTGCAATTTACAATGTCAAGCAAGATGGAGAACTATTTCTCTCTGGTGAAAACATTACCAAAGTTCCTGCAATTACAACAAGCTTGAAGACTTT TTCTTTGGCGAGTACTTTAATAAGAGATATTGATTTTTATGATCATCGTACTTGTTCTGAATTAGTATTGCCAAAATTTTGGAACATGTTCTTATCCAAT AATTCGCAACTCGAGAGCCTGCCGAAGAGTATATGGAACATGGTCTCTAATCAACTCTCGATTCAAAAGAGCCCGCTACTTGCAAGTTTGCCGGCGATCT CGGAGCCAGTTGCAAGCTTAACTTGTATTCGTATACATGCATGTGGAAATTTCAAAAGCCTGCCATCTAGCATCAGCAATATAAGACCTCTCAAGGATCT TAGTTTAACAAATACAGGTATTAAGTCACTACCTTCTAGTATCCAAGAATTGACGGAGCTTCTTTGGATTGACCTAAGCGACTGCAAGAGCCTCGAGTCA ATGCCAACTGGTATCCATAAGCTTTCCAAGTTGCAAACGCTGGTAATGTCTGGATGTGAGAGTATTCAATCTCTGCCTGAACTCCCACCAAATATGGAGG GATTGTATGTAAGTGGTTGCAAGTCTTTACAAGCTCTACCAAGCAACACATGTGAGGTGTTGCATCTGGATACACTCTATTTTGAGGAATGCCCACAACT GGCAAATTTCCTTGTTCATGCTACCTTGTATCCATCACCAAAGTGTACCCTTTTATGTTCAAGAAGTGAGCTTCCAGAATGGTTCACCTACAAGAATATG AACTTGAACAAAGAGGACGAGTATTGCAGTGTGAAGGTAGAGTTGCCTCCCCCTAATAACACTGACCAACCAATGACTGTTAAGGGAATTGCGTTTGGTA TTGTGTTCTCTTCCCGGTCTTGGGTGAGAATGGAATGCGATTGCAAGGTCGGCAACACCATCATTGCATCTTGGGAGTGCAGTTCCGACCAGTATTATAG CGGTGAACGTGATAACTCATCAGAAAAATTATGGTTGCAATACGACAAGATGGCCGTGGGAAGTAAAGAAGACGAAGCGTGGTATGTCAAACATGCTGGG CTCGTTGTTTCGTTCGATTTCTGCAGTTCTATATTTAATGAAAAAGTGGAGAAACCCAAAATGAAAGGATGTGGGGTTTCTCTGTTCTACTGA
AA sequence Show only first row Show all	>Lus10024150 pacid=23141475 polypeptide=Lus10024150 locus=Lus10024150.g ID=Lus10024150.BGIv1.0 annot-version=v1.0 MSTMHPASLVKVEDLIDRSLLTCVSDEKIEVHDLPKEMAWNIVNGEPKLGKRSRITDPDDIRKLLRVRDVHKLSTTSEVKNWSTSFLDFCKSIVMAVSPK VKRRQIVDMYRKGKDPLEEHRTTEGIHLDLSNAKEMYLEADTFDGMNSLTFLKFEDPDISENMKKNRLHFPYSGLSSLPDGLRWLQWDRYPSKYLPSSFL PQHLVHLIIRNSPIQRCWEAHDQPQLVNLLVLNLSYCRNLIVIPNISSSSKLEKLVLFKCESLVEVPSYVQYLTKLIKLELSYCRNLERLPPKLDSKLLK HVKMTRCLNVTHCPEIISKDLEDFDLYGTSLIELPSAIYNVKQDGELFLSGENITKVPAITTSLKTFSLASTLIRDIDFYDHRTCSELVLPKFWNMFLSN NSQLESLPKSIWNMVSNQLSIQKSPLLASLPAISEPVASLTCIRIHACGNFKSLPSSISNIRPLKDLSLTNTGIKSLPSSIQELTELLWIDLSDCKSLES MPTGIHKLSKLQTLVMSGCESIQSLPELPPNMEGLYVSGCKSLQALPSNTCEVLHLDTLYFEECPQLANFLVHATLYPSPKCTLLCSRSELPEWFTYKNM NLNKEDEYCSVKVELPPPNNTDQPMTVKGIAFGIVFSSRSWVRMECDCKVGNTIIASWECSSDQYYSGERDNSSEKLWLQYDKMAVGSKEDEAWYVKHAG LVVSFDFCSSIFNEKVEKPKMKGCGVSLFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69550			disease resistance protein (TI...		Lus10024150 [exp]	0	1
					Lus10001992 [exp]	2.8	0.7236
AT1G27180			disease resistance protein (TI...		Lus10040576 [exp]	12.3	0.6985
					Lus10001325 [exp]	15.2	0.6523
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10011443 [exp]	21.1	0.6873
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023281 [exp]	21.6	0.6849
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019831 [exp]	25.9	0.6363
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10041449 [exp]	31.4	0.6795
AT3G50940			P-loop containing nucleoside t...		Lus10015802 [exp]	34.0	0.6586
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10019719 [exp]	34.0	0.6389
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10010185 [exp]	34.4	0.6331

Compare expression of checked genes

Lus10024150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.