Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07960 914 / 0 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G56960 862 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G41210 855 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT1G77740 668 / 0 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G21980 663 / 0 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT2G26420 629 / 0 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G10900 450 / 6e-148 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G09920 389 / 9e-124 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G60890 367 / 8e-116 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G01460 226 / 1e-66 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039507 [exp] 1399 / 0 AT3G07960 942 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10008651 [exp] 1144 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10002734 [exp] 1133 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10039011 [exp] 881 / 0 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10027306 [exp] 857 / 0 AT3G56960 1185 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10010458 [exp] 850 / 0 AT3G56960 1147 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10003819 [exp] 846 / 0 AT3G56960 1148 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10029661 [exp] 646 / 0 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10018200 [exp] 518 / 9e-174 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G027900 [exp] 999 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.003G196000 [exp] 992 / 0 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.016G036800 [exp] 899 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.002G088100 [exp] 667 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.005G172800 [exp] 663 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 645 / 0 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 612 / 0 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.001G211200 [exp] 421 / 4e-136 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 405 / 3e-130 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.006G121200 [exp] 400 / 8e-128 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10024151 pacid=23141543 polypeptide=Lus10024151 locus=Lus10024151.g ID=Lus10024151.BGIv1.0 annot-version=v1.0 ATGAGCAAAGAGTACAAAGGCATTGCAAAGGTTTGGGAAGCTACCATAAGAAAATCACAAGGTATAATTTCGACAAAGAAACGAACCCACAACATTTTCG GGACCATGATGTCAGCATCTGTAGCTCACGCGGACGACGACGATCCTTCAACTCACCAGCGCAAAGAAATCGTTCTCCCGAACGGCGACTTCTACACGGG CCAGTGGCTGGACGGATTCCCTCACGGTCACGGCAAGTACATTTGGACCGACGGATGTGTCTACCTCGGGGATTGGCAAAGGGGGAAGAAGACCGGGAAA GGGAAATTCAGCTGGCCGTCCGGTGCTACCTACGATGGGGATTTCAAGGCTGGATATATGGACGGGAAAGGCAACTATACGGCCACCAATGGGGATACCT ATAAAGGTTTGTGGGCTATGAATCTGAAACAGGGACAAGGGATTCAAAGCTATCATGTCGTTGGGGATTCATATGATGGTGCGTGGAAGAAAGGTGTGCA GGATGGGCATGGCAAGTACCAATGGAAGAATGGGAGTAGCTATGTTGGTCAGTGGAGAGGAGGAGTTATGCATGGCAATGGAGTCATTAACTTTGGGAAT GGGAATAGTTATGACGGGAATTGGGAAGATGGATTGCCTAGTTTGGATGAAGAACGGCAGATGTTCTCTGGTGAGTTGGCAGGGTGTAAGGTTTCTGTTT CTGAGGGTATTTATGTTTATCCGTCACAAAAGACTTGTTACGTGGCCGGTTCTGATCGAGGATCGGTTGATGGGAGGCTAAGTAACTATAGCATGAGTTC TTGGGAAGGCAGTGACTACGGTGTTGGTGGATTTGATGGAGATGGTGGTGACGAACATCACTTGAGTGAGAGCTTGAATAAGCTGAGACTACAGACAACC AAGAAACAAGGAGAGACAATATCCAAAGGGCACAAGAATTATGAGCTTATGCTCAATCTCCAGCTGGGAATCAGACATTCAGTAGGGAGGCCTGGTCCTC AAATATCTCTTGATCTTAAGTCTTCAGCATTTGACCCAAGAGAGAAAGTATGGACTAAATTTCCACCAGAGGGATCAAAATACACTCCACCTCACCAGTC TTCTGATTTCAGATGGAAGGATTATTGCCCTTTAGTGTTCAGGACTCTCAGGAAATTGTTCAATGTTGATGCAGCTGATTACATGCTGTCTATATGTGGG AATGATGCACTAAGGGAGTTGTGTTCTCCTGGAAAAAGTGGAAGCTTCTTTTACTTGACTAGTGATGATCGTTACATGATCAAGACAATGAAGAAGGCCG AAGTCAAAGTGTGTGTTTTTGCATCTTGCACATACTTATCCTCAGTCGCACATGAGTTTATGATTCCATCAGCTAAATTACCATGTCCTTGCGTACTCAT ACGGATGTTACCCGCCTACTATAAGCATGTTCGACAATTCGAGAACACTCTTGTCACCAAATATTTTGGCCTTCATTGCGTGAGGTTAGCCGGGCCAAAC CAAAAGAAGGTGCGCTTCATTATAATGGGAAATCTGTTCAACACTATGTATACGATTCATAGGCGCTTTGACTTGAAAGGTTCTTCTCATGGTCGCATTA CTTGTAAACCCGAATCGGAAATCGATGCTTCCACGACTCTCAAGGACCTTGATCTCAACTATTTATTCCGGTTGCAGAGAGTATGGTACCAAGAGTTCTG CAGGCAAATAGACAGAGACTGTGAACTCCTTGAGCAAGAGAGGGTGATGGACTACAGTCTTTTAGTTGGCATTCACTTTAGAGAGGCTTCATATAGGGAT GCTTTGACACCTCCAAGGACATCCGGAGTTCGTACCCCTACTGGCCCCCGTACTTCCTCAGGAAATCAAACTCCTACACGAAACGGAGATGGCGGTGGTG ATTCTGCTGGAGTTGCAAGACTTTCTCGAGCAGAGATGGATAAACTTGTCCTTGATCCATCCCGGTGGCCTTCCATCAAACTAGGAATGAACATGCCAGC AAGAGTGGAAAAGACGGTAAGAAAGAACGACGGAGAGCCTCAGCTAGTGGGAGAGCCAACGGGGGAACTGTACGAAGTCATCCTGACATTTGGAATCATA GACATACTACAAGACTATGATATCAGCAAAAAGCTTGAGCATGCTTACAAATCAATGCAGTATGATCCAACATCAATCTCAGCCGTTGATCCAAAGCAGT ACTCAAGGAGATTCAGGAACTTCATCTTCAAAGTTTTCGTAGAAGAAAGTTGA
AA sequence Show only first row Show all	>Lus10024151 pacid=23141543 polypeptide=Lus10024151 locus=Lus10024151.g ID=Lus10024151.BGIv1.0 annot-version=v1.0 MSKEYKGIAKVWEATIRKSQGIISTKKRTHNIFGTMMSASVAHADDDDPSTHQRKEIVLPNGDFYTGQWLDGFPHGHGKYIWTDGCVYLGDWQRGKKTGK GKFSWPSGATYDGDFKAGYMDGKGNYTATNGDTYKGLWAMNLKQGQGIQSYHVVGDSYDGAWKKGVQDGHGKYQWKNGSSYVGQWRGGVMHGNGVINFGN GNSYDGNWEDGLPSLDEERQMFSGELAGCKVSVSEGIYVYPSQKTCYVAGSDRGSVDGRLSNYSMSSWEGSDYGVGGFDGDGGDEHHLSESLNKLRLQTT KKQGETISKGHKNYELMLNLQLGIRHSVGRPGPQISLDLKSSAFDPREKVWTKFPPEGSKYTPPHQSSDFRWKDYCPLVFRTLRKLFNVDAADYMLSICG NDALRELCSPGKSGSFFYLTSDDRYMIKTMKKAEVKVCVFASCTYLSSVAHEFMIPSAKLPCPCVLIRMLPAYYKHVRQFENTLVTKYFGLHCVRLAGPN QKKVRFIIMGNLFNTMYTIHRRFDLKGSSHGRITCKPESEIDASTTLKDLDLNYLFRLQRVWYQEFCRQIDRDCELLEQERVMDYSLLVGIHFREASYRD ALTPPRTSGVRTPTGPRTSSGNQTPTRNGDGGGDSAGVARLSRAEMDKLVLDPSRWPSIKLGMNMPARVEKTVRKNDGEPQLVGEPTGELYEVILTFGII DILQDYDISKKLEHAYKSMQYDPTSISAVDPKQYSRRFRNFIFKVFVEES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10024151 [exp]	0	1
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Lus10029947 [exp]	3.5	0.8898
					Lus10010828 [exp]	7.7	0.8801
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10004652 [exp]	10.0	0.8884
AT4G10790			UBX domain-containing protein ...		Lus10039951 [exp]	14.4	0.8846
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10004370 [exp]	15.2	0.7633
					Lus10017955 [exp]	17.0	0.8829
AT3G07470			Protein of unknown function, D...		Lus10004300 [exp]	17.5	0.7399
AT2G24960			unknown protein		Lus10042421 [exp]	19.4	0.8803
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10033212 [exp]	23.4	0.8778
AT5G63080			2-oxoglutarate (2OG) and Fe(II...		Lus10042091 [exp]	23.6	0.7210

Compare expression of checked genes

Lus10024151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.