Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24550 480 / 4e-165 BGLU32 beta glucosidase 32 (.1) AT2G44480 473 / 9e-163 BGLU17 beta glucosidase 17 (.1.2) AT1G26560 459 / 3e-157 BGLU40 beta glucosidase 40 (.1) AT3G60140 461 / 4e-157 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT5G24540 458 / 2e-156 BGLU31 beta glucosidase 31 (.1) AT3G60120 454 / 1e-154 BGLU27 beta glucosidase 27 (.1) AT5G54570 453 / 1e-154 BGLU41 beta glucosidase 41 (.1) AT2G44470 450 / 1e-152 BGLU29 beta glucosidase 29 (.1.2.3) AT2G44450 443 / 6e-151 BGLU15 beta glucosidase 15 (.1) AT2G44460 444 / 2e-150 BGLU28 beta glucosidase 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039513 [exp] 1077 / 0 AT2G44480 472 / 3e-162 beta glucosidase 17 (.1.2) Lus10030577 [exp] 913 / 0 AT5G24550 461 / 2e-157 beta glucosidase 32 (.1) Lus10030516 [exp] 888 / 0 AT2G44480 476 / 4e-164 beta glucosidase 17 (.1.2) Lus10012869 [exp] 874 / 0 AT5G24550 467 / 4e-160 beta glucosidase 32 (.1) Lus10030911 [exp] 871 / 0 AT5G24550 475 / 1e-163 beta glucosidase 32 (.1) Lus10030518 [exp] 856 / 0 AT5G24550 485 / 3e-167 beta glucosidase 32 (.1) Lus10012871 [exp] 822 / 0 AT5G24550 466 / 1e-157 beta glucosidase 32 (.1) Lus10039541 [exp] 788 / 0 AT2G44480 400 / 6e-135 beta glucosidase 17 (.1.2) Lus10012868 [exp] 779 / 0 AT5G24550 435 / 1e-145 beta glucosidase 32 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015100 [exp] 546 / 0 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.005G059500 [exp] 527 / 0 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.004G040700 [exp] 525 / 0 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 503 / 2e-174 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 502 / 3e-174 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G223300 [exp] 495 / 4e-171 AT2G44480 529 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222904 [exp] 493 / 1e-170 AT2G44480 531 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222900 [exp] 493 / 2e-170 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222704 [exp] 492 / 4e-170 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.004G109166 [exp] 491 / 2e-169 AT5G42260 525 / 0.0 beta glucosidase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10024152 pacid=23141479 polypeptide=Lus10024152 locus=Lus10024152.g ID=Lus10024152.BGIv1.0 annot-version=v1.0 ATGGCTTTAGCAAATGTTAATCTAGTAGTGATCATATTTCTGTTAGCCACAGCTGTAGCTCATAAAGACGACATTTCTCCAACCTTAAGCACTGACCCTT GTTCTGCCTCGGACTACAAATACGAGCCCTCCAACGAGATTCCCAATGGCCGTTTGGATTTCCCTCCGGGCTTCGTCTTTGGGACAGCCACTTCTTCCTA TCAGGTCGAGGGCGCTGCAACTTTTACCCATGGAAAGGGGCCGAGCGTCTGGGATAGATTTACCCATCAGTTTCCAAATAGGATTTTACAAGGCGGCAAT GGAGATGTGGCTATCGATCAGTACGAGCTGTTCGAGGAGGATATCGTAAGAATGAAGTATCTGAATGTGGATGCTTACAGATTCTCCATTTCGTGGCCGC GGATTATACCATCTGGTAAGAGAAGTGACGGAGTCAATCAAGAAGGGATCGAGTTTTACCACAACCTCCTCGATGCACTCAGGAAACATGGAATCAAGCC GTACGTCACAATATGGCATTGGGATACGCCTCAAGGTCTCGAAGCTGAGTACGGTGGCTTCTTAAGCCGCAACATTGTTAAAGATTTTGAAGACTATTGT GACCTCTTATTCGAAGAATATGGTTCAAAAGTAAATAAGTGGATAACTTTGAATGAGCCTATGGGTAACACGATAAAAGCTTACGATGAAGGAGTTTTCG CACCAGGACGTTGTTCGGTATGGGTTGATAAGAAATGTCAACATGGAGACTCAGCAACAGAACCTTACATTGTTACTCATAATCTTCTTCTTTCTCATTC CGCTGCTTACCACTTATTCAAAAACAAATACCAGAAACATTATCCTGCTGCAGAAATAGGAATAACCTATATCACATATTGGTTTGTTCCTTATTCTAAT GCAACTGAAGATATTGATGCTGCACAAAGAGCTCTAGACTGGATGTATGGCTGGTACATGGATCCAATCACATATGGCCGATATCCTAGTACCATGAAAG AATTATTGGGATCTCGCTTACCAGTATTCACAGATGAAGAATCACGCTTGCTTAAAAATTCATACGATTTTGTGGGCCTCAACTACTACACCGGTTACTA TGTGAAGAACAATCCCGATTTCGATTATGTCCATCTCCGATATGCAACTGATTCACACAGCATTACCTCCCCTGACAAAGACGGAGTCTACATTGGAGAA CATTTGGGTTCTTACTGGCAATATTTATATCCCGAGGGCATGCGGAAGTTGTTGGAGTACACTAAAGAAAAATACGACGATCCCGTTATATACATTACCG AGAATGGAATGTCGACCAAGGACAATGCTACTCAAACTTTAGCAGAGGCCTTGAAGGACGAGAGCAGGATTAATTTCTACAACAAACATCTTACAAGTGT TCTGCAAGCCATTAATGAGAAGCAGGTGAAAGTGAAAGGGTTCTTTGCATGGTCGTACGCCGACAACTTTGAATGGAATGAGGGATACACGGTTAGGTTT GGGTTGTACTATATTAACTACACAGATCTCTCGAGACATCCAAAGGACTCAGCTTGCTGGTACACCAATTTCTGTGGCAAGACCCAACCCCAGCCTCTTA ATTACTTTGATCTTCATCGGCTTATCACTACACCAGCTGCTCTCGGAGGCCGACGGGCTCTCTCCTCCTCTACCCGCCTGGATAATTAG
AA sequence Show only first row Show all	>Lus10024152 pacid=23141479 polypeptide=Lus10024152 locus=Lus10024152.g ID=Lus10024152.BGIv1.0 annot-version=v1.0 MALANVNLVVIIFLLATAVAHKDDISPTLSTDPCSASDYKYEPSNEIPNGRLDFPPGFVFGTATSSYQVEGAATFTHGKGPSVWDRFTHQFPNRILQGGN GDVAIDQYELFEEDIVRMKYLNVDAYRFSISWPRIIPSGKRSDGVNQEGIEFYHNLLDALRKHGIKPYVTIWHWDTPQGLEAEYGGFLSRNIVKDFEDYC DLLFEEYGSKVNKWITLNEPMGNTIKAYDEGVFAPGRCSVWVDKKCQHGDSATEPYIVTHNLLLSHSAAYHLFKNKYQKHYPAAEIGITYITYWFVPYSN ATEDIDAAQRALDWMYGWYMDPITYGRYPSTMKELLGSRLPVFTDEESRLLKNSYDFVGLNYYTGYYVKNNPDFDYVHLRYATDSHSITSPDKDGVYIGE HLGSYWQYLYPEGMRKLLEYTKEKYDDPVIYITENGMSTKDNATQTLAEALKDESRINFYNKHLTSVLQAINEKQVKVKGFFAWSYADNFEWNEGYTVRF GLYYINYTDLSRHPKDSACWYTNFCGKTQPQPLNYFDLHRLITTPAALGGRRALSSSTRLDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10024152 [exp]	0	1
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10031239 [exp]	1.0	0.9126
AT2G38870			Serine protease inhibitor, pot...		Lus10018784 [exp]	1.4	0.8808
AT5G39110			RmlC-like cupins superfamily p...		Lus10035293 [exp]	3.9	0.8292
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031237 [exp]	4.2	0.8779
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10017022 [exp]	6.5	0.7586
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039513 [exp]	7.1	0.7789
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10019801 [exp]	8.9	0.8379
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031238 [exp]	12.5	0.7686
AT3G19920			unknown protein		Lus10017384 [exp]	21.9	0.7600
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10021345 [exp]	22.2	0.7033

Compare expression of checked genes

Lus10024152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.