Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19160 45 / 4e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039517 [exp] 477 / 4e-169 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G027600 [exp] 541 / 0 ND / Potri.003G196200 [exp] 452 / 1e-157 ND / Potri.003G033300 [exp] 52 / 4e-07 AT4G19160 522 / 0.0 unknown protein Potri.001G193400 [exp] 50 / 2e-06 AT4G19160 516 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024153 pacid=23141567 polypeptide=Lus10024153 locus=Lus10024153.g ID=Lus10024153.BGIv1.0 annot-version=v1.0 ATGACGGCTGCTGCTGCTGCTGCTTCTCTGTCAGCTCCTCCATTCATTCATTCTGTTTCTCCTTTCAAATCTTCTTCCGCCTCGTTCCCCCCCAAGTCCT CTTCCTCCAGGCTTCAACCCTTGTGTTCCGATATTTCCTGTTGTGGAGGCTCTCGCCCTCGTTACCAGACCGGCGACCTCAAGTTCCCTTTACGCGACGC CTTGGATTCCTCCCGCATGGAAACCTCTCATGCCAGGGAGGCTAGGCGGGGGTTCTTGTCTCAAATTGAGAAATTATCTGATATCGAGAGGGAAACCAGC ATTAGCATCAATCGACGTGTTGATTTGGGGAAAACCGCATTGTACATAGCTGCCGAGGATGATTCTCTCATATCACACTCCTCCGTTCCCCTCCCCGTGG ATTCCTTCATCCAAAGACTCGACGATCTTTCCATGGATTTCTGCTCCACCAATAGCTCCTCCCTATGCTCTTCACCGGACAATTTACTCGACAGTTTAGA AAAATTCTTGTACATTAAAAAGGGTTTTAGAAGAAGCCGGTCAAAGCCTCGCTTCGAGACAAGAGCTTTGTATCTTCACTCGGTTTTAACACATCGATCG GGCTCAGCAGTTATGCTGTCTCTTATTTACTCTGAAATTCTGAAAATGATTCGTTTATGGGGCCTCCTCGATTTCGATTGTGAGATATACTATCCTAATA GCAGCAGTGGCCTTCCCAGAGGCTATGATAAGAAGACTAGCAAGGAGTCTGATCAGTTGCATATAATGACGTCTCAAAATGTGTTACAAGAGATATTGAG TAACTTGAAGGAGGCTTTCTGGCCATTTCAACATGATCAGACCCGGAGCTTATTCTTGAGCGCCGCACATGCTGCCAATTGTGTCGATAGAACTAACACT ACCGAAGAGAGTGGCTATCAGCTAGCATCTGCAAAGGCTGCTCAGCACAGGCTAGATCGTGGAGTTTGGACTAGTGTTACTTTTGGAGACATGAGACGTG CAATGTCTGCTTGTGAACGTTTAGTTCTCCTGGGATCTGATCCCATAGAACTACGAGATTATAGCATACTACTATATCACTGTGGATTCTATGACCAATC ACGCCAATATCTCAAATTATTCAAGGATACGAAGGGTTCATGGGAAAATGAGGAATCATCAAGTGAGATGAGCAGAATGGAGGATGATGCTGTCGAGAAG TTGAGGATGCGCCTTGACCTGATCTCCATGGAAGTGGGTTGGAGCGAGCCCTCACATATCAGGAATTTTCTGGGAAATAATTCTGAACCATGGTAG
AA sequence Show only first row Show all	>Lus10024153 pacid=23141567 polypeptide=Lus10024153 locus=Lus10024153.g ID=Lus10024153.BGIv1.0 annot-version=v1.0 MTAAAAAASLSAPPFIHSVSPFKSSSASFPPKSSSSRLQPLCSDISCCGGSRPRYQTGDLKFPLRDALDSSRMETSHAREARRGFLSQIEKLSDIERETS ISINRRVDLGKTALYIAAEDDSLISHSSVPLPVDSFIQRLDDLSMDFCSTNSSSLCSSPDNLLDSLEKFLYIKKGFRRSRSKPRFETRALYLHSVLTHRS GSAVMLSLIYSEILKMIRLWGLLDFDCEIYYPNSSSGLPRGYDKKTSKESDQLHIMTSQNVLQEILSNLKEAFWPFQHDQTRSLFLSAAHAANCVDRTNT TEESGYQLASAKAAQHRLDRGVWTSVTFGDMRRAMSACERLVLLGSDPIELRDYSILLYHCGFYDQSRQYLKLFKDTKGSWENEESSSEMSRMEDDAVEK LRMRLDLISMEVGWSEPSHIRNFLGNNSEPW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024153 [exp]	0	1
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10022246 [exp]	1.7	0.9239
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Lus10008089 [exp]	3.7	0.8263
AT4G37080			Protein of unknown function, D...		Lus10032768 [exp]	4.2	0.8472
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10040192 [exp]	4.5	0.8506
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10008768 [exp]	5.3	0.8597
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	5.7	0.8818
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	6.2	0.8882
AT3G18500			DNAse I-like superfamily prote...		Lus10036357 [exp]	8.4	0.8389
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005367 [exp]	9.4	0.8410
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10029702 [exp]	12.4	0.8341

Compare expression of checked genes

Lus10024153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.