Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63940 653 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 573 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G77280 494 / 7e-165 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G16750 387 / 5e-126 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 329 / 8e-106 Protein kinase superfamily protein (.1.2.3) AT5G57670 252 / 6e-75 Protein kinase superfamily protein (.2) AT5G65530 248 / 8e-75 Protein kinase superfamily protein (.1) AT1G66460 247 / 4e-74 Protein kinase superfamily protein (.1) AT5G56790 251 / 2e-73 Protein kinase superfamily protein (.1) AT1G55200 249 / 8e-73 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039518 [exp] 1184 / 0 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10028661 [exp] 654 / 0 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10000968 [exp] 650 / 0 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10014122 [exp] 417 / 1e-136 AT2G16750 507 / 4e-173 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10019787 [exp] 410 / 3e-134 AT2G16750 513 / 4e-175 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10017273 [exp] 299 / 4e-92 AT4G35030 325 / 2e-105 Protein kinase superfamily protein (.1.2.3) Lus10013566 [exp] 295 / 5e-92 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10042327 [exp] 262 / 8e-78 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10019990 [exp] 261 / 1e-77 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G102400 [exp] 828 / 0 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 800 / 0 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 671 / 0 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 486 / 2e-163 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G077900 [exp] 480 / 4e-160 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.009G134700 [exp] 465 / 3e-155 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 337 / 2e-104 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.018G096100 [exp] 263 / 1e-78 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G173700 [exp] 259 / 2e-77 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.017G110400 [exp] 252 / 1e-73 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10024154 pacid=23141446 polypeptide=Lus10024154 locus=Lus10024154.g ID=Lus10024154.BGIv1.0 annot-version=v1.0 ATGAAGCTGACTGAGAGTGAAGACGCGGCGGCGGGCAGCAGCAGCAGCGGTGGAGGAGGAAAGGAAGTGGTGGTGGTGGGAGTGAGGTTGGATTCACAGA GTAAAGAGCTGCTTACTTGGACTCTTATGAAAGCTACCAAGCCTGGAGACCGTGTTATTGCTCTTCATGTTCTTAATTCCACAGCAACTGCAGAAATTGA AGGAGGAACAGGATCGCTTCTGGCTTTAGTCAAGACATTTGATTCTTTATTGGCAGTTTACGAAGGTTTCTGCAACCTAAAACAGGTGGATTTGAAGCTA AAAGTGTGCAGAGGTGAATCAGTGAAGAGAATTCTGGTGAGAGAAGCGAAAGCTAATGGTGCTTCCAAAATTATTGTTGGGACGTCCAAGAGTAATCACA CAATCCGTCCTACAACCTCCATAGCCAAGTATTGCTCCAAGAAATTGTCCAAAGGTTGCTCTGTGTTTGCAATTAGTAATGGCAAAGTTATATATCAGAA AGATGCAAATGAGGATCCTTTACAAGATGGATCGATCCAAGAAAAGCATACTTCTTTCAGGAAAGCACCGACTGTGAATTCTCTAGATCGTGCTTCAAGC TTGTCATTGAAGGATGAGAGAGAACCAGCAAGATCATGTCTTGCTCATAAGGTCCATAGTTCCAGAGCTTTGATAACAACTTCGCAGTCTAATGTGACGG CTGAGTTTCCAGATCACAAATTGGGTTGGAAACTTGTTCGCCAGACACTTACTGGAAAGCAGGAAAGTACAAAGAAATTCCATGCCTCAAAGGTAGTGAA AAAGTTTTTAAAACTACCAACTCATAATTCATCTTCTTCATTGGTGTATCCTGATCAAAGGCATAGTGGTTCCCGTTCACACAAAGATAGGCCGGCCCAC TCGAAAGGACAGAGCAGCGCTATTGTAGCAGCCAGTTCTAAGGCAGCAGTTGTTTCTCCCTCCTTCTCAGAGGGTATTCCGGAGGAGTTGAAAGGTTTGT ATGAAAAGTATTCATCAATGTGCCGATGGTTCAGCTATGAAGAACTTGTGGCAGCCACGTCTAACTTTGCTCCAGAAAACATAGTTGGAACTGGTGGGAG TAGTCATGTTTATAAAGGGATTCTTCCTAGTGGCAAGGAATTGGCAGTGAAAATCTTGAAGCCTTCTGATGATGTCCTGAAAGAGTTTGTTGTAGAAATC GAGATGATTACGACCTTGCATCACAAGAACATAATATCTCTCTTTGGTTTCTGTTTCGATCAAAGTAAATTACTTTTGGTATATGATTTTCTATCAAGAG GAAGCCTTGAGGAGAACCTTCACGGTAATAAGAAGGATGTTGTGAACTTTGGTTGGCATGAGAGACATAAGGTGGCCATTGGTGTCGCCGAAGCACTTGA CTATTTACACAACCACTGTGATCATCCTGTGATTCATAGGGACGTCAAGTCTTCAAATGTTCTTCTCTTCGATGATTTTGAGCCACAGCTTTCTGATTTC GGTCTAGCTTGCTGGATGTGTTTGTCAACGGAAGAAACCAACAGTGACGTTGCAGGAACCTTTGGTTACTTGGCTCCAGAGTATTTCATGCACGGAAGAA TGAGTGATAAATTAGACGTCTTTGCATTTGGGGTGGTACTTCTTGAACTTCTCTCTAGCAGAATGGCAATTGCTAGTTCAGATAGTCAAGGCCAAGAGAG CCTCCTTATGTGGGCGAGGCCGATTTTACACGGTGGTAAACAGTCTCAGTTACTGGATCCACATATAGAGACTGAGGATTCAGAGGATGAGATTGAGAGA ATGGTCTTGGCTGCAACTCTTTGCATTAGAAGCTGTCCGAAATCCAGGCCACAAATCAGCCTTATACTGAAGCTTCTACAAGGTGACAGTGAAATAAAAA AATGGGCTAGGCAAGAAATCGCTCGATCAGAAATCGGTAATGGAAGTGAGGGGAGAAGAGATCCAAGCAACATACAATCCCATCTGAATCTTGCATTGCT AGATCTGCAGGATGATACCCTTTCCATCAGCAGTCATAGCGGACATGGCATTACAGTCGAAGATTACTTGCAAGGGAGATGGAGCCGTACACCGAGTTTT GACTAG
AA sequence Show only first row Show all	>Lus10024154 pacid=23141446 polypeptide=Lus10024154 locus=Lus10024154.g ID=Lus10024154.BGIv1.0 annot-version=v1.0 MKLTESEDAAAGSSSSGGGGKEVVVVGVRLDSQSKELLTWTLMKATKPGDRVIALHVLNSTATAEIEGGTGSLLALVKTFDSLLAVYEGFCNLKQVDLKL KVCRGESVKRILVREAKANGASKIIVGTSKSNHTIRPTTSIAKYCSKKLSKGCSVFAISNGKVIYQKDANEDPLQDGSIQEKHTSFRKAPTVNSLDRASS LSLKDEREPARSCLAHKVHSSRALITTSQSNVTAEFPDHKLGWKLVRQTLTGKQESTKKFHASKVVKKFLKLPTHNSSSSLVYPDQRHSGSRSHKDRPAH SKGQSSAIVAASSKAAVVSPSFSEGIPEELKGLYEKYSSMCRWFSYEELVAATSNFAPENIVGTGGSSHVYKGILPSGKELAVKILKPSDDVLKEFVVEI EMITTLHHKNIISLFGFCFDQSKLLLVYDFLSRGSLEENLHGNKKDVVNFGWHERHKVAIGVAEALDYLHNHCDHPVIHRDVKSSNVLLFDDFEPQLSDF GLACWMCLSTEETNSDVAGTFGYLAPEYFMHGRMSDKLDVFAFGVVLLELLSSRMAIASSDSQGQESLLMWARPILHGGKQSQLLDPHIETEDSEDEIER MVLAATLCIRSCPKSRPQISLILKLLQGDSEIKKWARQEIARSEIGNGSEGRRDPSNIQSHLNLALLDLQDDTLSISSHSGHGITVEDYLQGRWSRTPSF D

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77280			Protein kinase protein with ad...		Lus10024154 [exp]	0	1
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10039207 [exp]	2.0	0.7905
AT3G17590		CHE1, BSH	BUSHY GROWTH, transcription re...		Lus10005562 [exp]	5.5	0.7553
AT1G05430			unknown protein		Lus10006108 [exp]	6.2	0.7720
AT1G73440			calmodulin-related (.1)		Lus10015884 [exp]	6.9	0.6928
AT5G08630			DDT domain-containing protein ...		Lus10029550 [exp]	8.7	0.7776
AT3G26115			Pyridoxal-5'-phosphate-depende...		Lus10036952 [exp]	17.1	0.6911
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10022815 [exp]	18.3	0.7630
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10020580 [exp]	20.2	0.7569
AT5G16060			Cytochrome c oxidase biogenesi...		Lus10033547 [exp]	22.1	0.7498
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10001205 [exp]	23.6	0.7289

Compare expression of checked genes

Lus10024154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.