Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54440 1596 / 0 glycoside hydrolase family 2 protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039520 [exp] 1255 / 0 AT3G54440 968 / 0.0 glycoside hydrolase family 2 protein (.1.2.3) Lus10039519 [exp] 750 / 0 AT3G54440 567 / 0.0 glycoside hydrolase family 2 protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G027400 [exp] 1708 / 0 AT3G54440 1628 / 0.0 glycoside hydrolase family 2 protein (.1.2.3) Potri.003G196500 [exp] 1694 / 0 AT3G54440 1650 / 0.0 glycoside hydrolase family 2 protein (.1.2.3) Potri.013G021200 [exp] 47 / 0.0001 AT1G09010 1457 / 0.0 glycoside hydrolase family 2 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF02837 [flax] [poplar] Glyco_hydro_2_N Glycosyl hydrolases family 2, sugar binding domain CL0058 [flax] [poplar] Glyco_hydro_tim PF02836 [flax] [poplar] Glyco_hydro_2_C Glycosyl hydrolases family 2, TIM barrel domain CL0103 [flax] [poplar] Gal_mutarotase PF02929 [flax] [poplar] Bgal_small_N Beta galactosidase small chain CL0159 [flax] [poplar] E-set PF00703 [flax] [poplar] Glyco_hydro_2 Glycosyl hydrolases family 2
Representative CDS sequence Show only first row Show all	>Lus10024155 pacid=23141550 polypeptide=Lus10024155 locus=Lus10024155.g ID=Lus10024155.BGIv1.0 annot-version=v1.0 ATGTCAGCTTCGCTTCCGAGCCCTGGGTTGGTGTTTCCTTTTGAAGATGTGTCCCACAGAGTTTGGGAGGATCCCTCGTTTATAAAGTGGAGGAAGAGAG ATCCTCATGTGCCTTTGCACTGCCATGAATCTGTTCAAGGATCCCTAAAGTACTGGCATCAGCGTAACAGAGTGGATGTTTTGTTATCAAAATCTGCTGT CTGGGGCGATGATGCTGTCCAAGAAGCTCTTGACTCTGCTGCCTTTTGGGTTAAGGAATTGCCTTATGTTAGGTCTTTGTCTGGCTTCTGGAAATTTTTC CTTGCTCCATGCCCTTCCAAAGTTCCTCCTGCATTTTTCGATGTTGCATTTCAGGATTCTGAATGGGGCATGTTACCTGTGCCTTCTAATTGGCAGATGC ATGGATTTGATAAGCCTATATATACAAATGTTGTATATCCATTTCCCCTCGATCCTCCACACGTACCACAGGATGATAATCCTACCGGCTGTTACAGAAC ATGCTTCCAGATTCCTACAGAATGGCAGGGTCGTAGGATATTCTTGCACTTTGAAGCTGTTGATTCCGCATTTTTTGTTTGGGTGAATGGTGTACTTGTG GGATATAGTCAGGACAGTAGGTTACCTGCTGAGTTCGAAATCTCGGATCACTGTTATCCAAGTGGGTCAGACGAGATGAATATTTTAGCTGTTCAAGTAC TTAGGTGGAGTGATGGGTCTTATCTTGAAGATCAAGATCATTGGTGGTTATCTGGTATCCACCGTGATGTGCTTCTTCTATCCAAGCCTCAGGTTTTCAT CACGGACTACTATTTCAAGTCAAGCCTTACTGAAGATTTTTCTTCTTCTGATATTCAGGTGGAAGTTAAAATAGACAACACCAGAGCTAATCCAAAGGAT GACATTCGTGCCAGCTTTACCATGGATGCTGCATTATATGACACTGGAAGCTGGTATGCAGGCGATAAATCTGGTCTGATTTCAACCAATGTGGCTAACT TGACCGCCATTCCCTCATCTGATGCTATTTTAGGGTTTATTGGTTATACACTTGCTGGTAAGCTGGACATGCCTAAGCTTTGGTCAGCGGAACAGCCAAA TCTGTACATTCTTGTTGTCACCCTCAAAGATGTATCAGGACACGTAGTTGACTGTGAATCGTCCCTGGTAGGCATAAGACAAGTATCAAAGGCCCCAAAA CAATTGCTTGTGAACGGGAAGCCAGTCATGATAAGAGGTGTGAATAGACATGAACATCATCCTCGTATTGGGAAAACAAACATCGAATCCTGCATGATTA AGGATCTTGTTCTTATGAAGCAATACAATATTAATGCTGTCAGAAATAGCCATTATCCTCAGCACCCCCGCTGGTATGAGCTGTGTGATCTCTTTGGCAT GTACATGATAGATGAAGCTAACATTGAGACACACGGCTTTCATCTCTCTGGACATCTGAAGCCCCCTGCAATGGAAATTTGTTGGGCTACTGCAATATTG GATCGTGTGATAGGCATGGTAGAGAGGGACAAAAACCATGCCAGTATAATATCATGGTCATTGGGAAATGAGTCCTCGTATGGACCCAATCATTCTGCCG CAGCAGGTTGGATTCGTGAAAAGGATACCTCACGGCTGTTGCACTATGAAGGAGGCGGATCTAGAACTTCATCTACTGACATTATTTGCCCCATGTATAT GCGTGTTTGGGACATACTGAAGATCGCAAAAGACCCAACTGAATTGCGTCCTTTGATATTATGCGAGTATTCTCATGCTATGGGAAACAGCAATGGGAGC TTAGATGAATACTGGGAGGCAATAGATAGCACATTTGGTCTCCAAGGAGGCTTCATCTGGGACTGGGTTGACCAGGGGTTACTGAAAGAAAGTACAGATG GTAGTAAACATTGGGCATATGGAGGAGATTTTGGAGATACGCCTAATGATCTGAACTTCTGTCTGAATGGTCTTATCTGGCCAGACAGAACTCCGCATCC TGCAATGCACGAACTGAAATATGTGTACCAGCCGATCAAAGTTTCAATAAAGGATGGCAAGCTTAAGATAATCAACACGAATTTCTTTGATACAACACAA TTGTTGGGGTTCACTTGGGCTGCTCATGGCGATGGAATTGAACTTGGATCTGGAGAACTCTCCCTTCCTGTTATAGAACCTCAGAAAAGTTATGAAATGA AGTGGGAATCTGCCGGTCACATCATCTCATCCACCCAACTACAGTTGCCTGGCAGAAAAGAGATCTTACCTCATGCCCTTAAAAGCAAAGATGCCACTAT CTGCACCGAAGTTGTTGGAGACACGATCAGGATAAGCCATCAGAGCCTTTGGGAGATTACATTTAATAAGTTGACAGGAGCAGTTGCAAGCTGGAAGGTT AAAGGAGTTTCTGTACTGAACAAGGGAATCTTCCCATGTTTTTGGCGCGCACCCACCGACAATGACAAGGGAGGTGAAGATCGTAGCTACTACTCCAAGT GGAAAGCAGCTCATCTTGACTCTATAATATTTGAGACAAAGAGCTGTTCCATTCAGAACTCAGCAAACGACCATGTGAAAATCGAAGTGGTGTACAGTGG CATTCCGAGAGATGGGGATGGTTCAACAACTCTGTTTCAAGTGGAAATGACCTACATTATCCATGGTTCTGGCGACTTGATTGTCAAATGCAAAGCAACC CCAAGTTCGAACCTTCCACCTTTGCCCCGTGTAGGAGTTGAGTTCCACCTGGAGAAAACCATGGACCAGGTTAGTTGGTATGGAAGAGGCCCATTTGAGT GCTACCCAGATAGAAAAGCTGCCGCCCACGTTGGAGTTTATGAACAGAAAGTGGCAGATATGCACGTTCCTTACATAGTACCTGGAGAATGTGGTGGAAG AACCGATGTCAGATGGGTAACCTTCCGGGACAAGGATGGTGTAGGAATTTTTGCGTCGTCGTATGGAAACTCCCCGCCATTGCAAGTAAGTGCGAGTTAC TACTCGACTTCGGAGCTTGACAGGGCAACACATAACGAAAGACTTATTCAAGGAAACGACATCGAGGTACATTTGGACCATAAGCATATGGGTTTGGGAG GGGATGACAGTTGGTCACCATGTGTTCATGAGAAGTTCTTGGTTCCAGCTATGCCATATACTTTCTCACTCAGAATGTGCCCAGTCACTGCGCAAACTTC TGGACTTGACACCTACCAGTCCCAAGTCCAGAATTAG
AA sequence Show only first row Show all	>Lus10024155 pacid=23141550 polypeptide=Lus10024155 locus=Lus10024155.g ID=Lus10024155.BGIv1.0 annot-version=v1.0 MSASLPSPGLVFPFEDVSHRVWEDPSFIKWRKRDPHVPLHCHESVQGSLKYWHQRNRVDVLLSKSAVWGDDAVQEALDSAAFWVKELPYVRSLSGFWKFF LAPCPSKVPPAFFDVAFQDSEWGMLPVPSNWQMHGFDKPIYTNVVYPFPLDPPHVPQDDNPTGCYRTCFQIPTEWQGRRIFLHFEAVDSAFFVWVNGVLV GYSQDSRLPAEFEISDHCYPSGSDEMNILAVQVLRWSDGSYLEDQDHWWLSGIHRDVLLLSKPQVFITDYYFKSSLTEDFSSSDIQVEVKIDNTRANPKD DIRASFTMDAALYDTGSWYAGDKSGLISTNVANLTAIPSSDAILGFIGYTLAGKLDMPKLWSAEQPNLYILVVTLKDVSGHVVDCESSLVGIRQVSKAPK QLLVNGKPVMIRGVNRHEHHPRIGKTNIESCMIKDLVLMKQYNINAVRNSHYPQHPRWYELCDLFGMYMIDEANIETHGFHLSGHLKPPAMEICWATAIL DRVIGMVERDKNHASIISWSLGNESSYGPNHSAAAGWIREKDTSRLLHYEGGGSRTSSTDIICPMYMRVWDILKIAKDPTELRPLILCEYSHAMGNSNGS LDEYWEAIDSTFGLQGGFIWDWVDQGLLKESTDGSKHWAYGGDFGDTPNDLNFCLNGLIWPDRTPHPAMHELKYVYQPIKVSIKDGKLKIINTNFFDTTQ LLGFTWAAHGDGIELGSGELSLPVIEPQKSYEMKWESAGHIISSTQLQLPGRKEILPHALKSKDATICTEVVGDTIRISHQSLWEITFNKLTGAVASWKV KGVSVLNKGIFPCFWRAPTDNDKGGEDRSYYSKWKAAHLDSIIFETKSCSIQNSANDHVKIEVVYSGIPRDGDGSTTLFQVEMTYIIHGSGDLIVKCKAT PSSNLPPLPRVGVEFHLEKTMDQVSWYGRGPFECYPDRKAAAHVGVYEQKVADMHVPYIVPGECGGRTDVRWVTFRDKDGVGIFASSYGNSPPLQVSASY YSTSELDRATHNERLIQGNDIEVHLDHKHMGLGGDDSWSPCVHEKFLVPAMPYTFSLRMCPVTAQTSGLDTYQSQVQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54440			glycoside hydrolase family 2 p...		Lus10024155 [exp]	0	1
AT2G39950			unknown protein		Lus10028266 [exp]	1.0	0.9413
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10042278 [exp]	4.5	0.9133
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004551 [exp]	5.0	0.9290
AT2G30880			Pleckstrin homology (PH) domai...		Lus10020739 [exp]	5.5	0.9317
AT3G54440			glycoside hydrolase family 2 p...		Lus10039519 [exp]	6.4	0.9050
AT2G24550			unknown protein		Lus10020142 [exp]	6.9	0.9295
AT3G63210		MARD1	MEDIATOR OF ABA-REGULATED DORM...		Lus10022060 [exp]	7.1	0.9156
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10039769 [exp]	8.0	0.9071
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030885 [exp]	8.4	0.9262
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10021253 [exp]	8.5	0.9240

Compare expression of checked genes

Lus10024155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.