Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54450 565 / 0 Major facilitator superfamily protein (.1) AT1G22540 430 / 7e-145 Major facilitator superfamily protein (.1) AT3G53960 423 / 1e-141 Major facilitator superfamily protein (.1) AT2G37900 414 / 2e-138 Major facilitator superfamily protein (.1) AT1G72125 406 / 1e-135 Major facilitator superfamily protein (.1) AT1G72130 405 / 1e-135 Major facilitator superfamily protein (.1.2) AT1G72140 402 / 3e-134 Major facilitator superfamily protein (.1) AT1G72120 393 / 1e-130 Major facilitator superfamily protein (.1) AT1G22550 393 / 2e-130 Major facilitator superfamily protein (.1) AT1G62200 391 / 2e-129 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039521 [exp] 962 / 0 AT3G54450 612 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 437 / 1e-147 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10016932 [exp] 417 / 9e-137 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10008252 [exp] 400 / 5e-133 AT1G22540 641 / 0.0 Major facilitator superfamily protein (.1) Lus10024340 [exp] 394 / 1e-130 AT2G37900 775 / 0.0 Major facilitator superfamily protein (.1) Lus10034206 [exp] 380 / 6e-125 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10035516 [exp] 379 / 9e-125 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10011055 [exp] 379 / 1e-124 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10003614 [exp] 375 / 5e-123 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G197333 [exp] 678 / 0 AT3G54450 663 / 0.0 Major facilitator superfamily protein (.1) Potri.T124706 [exp] 677 / 0 AT3G54450 662 / 0.0 Major facilitator superfamily protein (.1) Potri.001G027100 [exp] 664 / 0 AT3G54450 695 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 468 / 1e-159 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106600 [exp] 454 / 3e-154 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 443 / 6e-150 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079551 [exp] 437 / 8e-148 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 437 / 2e-147 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106925 [exp] 429 / 2e-144 AT1G22540 605 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 422 / 6e-142 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10024156 pacid=23141486 polypeptide=Lus10024156 locus=Lus10024156.g ID=Lus10024156.BGIv1.0 annot-version=v1.0 ATGGATTCATCCGTTGCTCCGGCGGCTCTGGAGGAAACCGGCGGCGGAAACCAGAAGAATACGAAGGAAAGCCAGAAAGGCGGCTGGAATGCCGCCTTCT TCATCATCTTCGTGGAGATGGCAGAGCGGTTTGCGTTCTACGGGTTGTCCGGAAACCTGATAACTTACCTGACAGGCCACCTCCACCAGCCGACAGTAAC GGCCGTGAAGAACATCAACACATGGGTTGGAGTGTCGTCCCTTTTCCCGATCGTCGGAGCAGTGGTCGCCGATTCCTACCTCGGCCGATTCACCACAATC CTGTTGGCGTCCTCCATCTACTTCACCGGGATGGTGCTGTTGACATTGTCAGTATCAGTGGTGCCAATGAGTCACCGGGAGGCGGTGTTCTTCACGGCGC TTTATGTGCTGGCGGTGGGAGAAGGGGGACACAAGCCTTGCGTGCAGACGTTCGCCGCAGACCAGTTCGACGAGGATAAGCCGGATGAAAAGGCGGCTAA GAGTTCATTCTTCAACTGGTGGTACTTGGGAATTGTGTTTGGCGCTTCTGCTGCTGTCTTGCTTGTCACTTACATCCAGGATAATGTTGGATGGACGGAG GGACTAGGGATATTGGCTGTGGCACTGGGGGCGGCGCTTGTGGTGTTCTTGATAGGGATAAAGACTTACAGGAAAGGAAGTCCGTACACTCGAGTTGCGC AAGTGGTGGTGGCCGCCATGAGGAAGAGGCGCGTGGACGCAAGTGGAGGCGAGTGCATCATGTGCTACGAGGAGGAAGAGAATGATGTAGAGGTTAAGCC TCGAATGGGTAGGACCAATCAGTTCAGGTTCTTGGACAAGGCAGCTATCATGGACAGTAGTAGCTCAACAACTGGAGGAGGCAGCAGAATTAGGAACCCA CGGCGGGTATGCACAGTAGGCCAAGTGGAAGAAGTGAAACCCCTAATCCGACTAATCCCAATATGGCTATCCTGCCTAATGTTCACAGTCGTCCTCACCC AAAACCACACTTTCTACGTCAAACAAGCCACCACTCTCGACCGCTCCTTATCCAAAAACTTCCAAATCCCTCCAGCTTCCCTCCAGAGCCTCATCGGCCT CACCATCCTCATAACCGTCCCTCTCTACGACCGCGTTTTCGTCCCTTTCGCCCGCCGCTTCACCGGCCACCCTTCCGGAATCTCCGTCCTCCAGCGCATC GGCTTCGGCCTCTTCCTCTCCATCGTCGAGGCATCCGTCGCTGCCCTTGTCGAGACCAGGCGGCTCCACGTGACCCACCCCATGAGCGTGTGGTGGCTGA TCCCGCAGTATGCGGTGAGCGGGATGTCGGACGCGTTTACCGTGGTGGGGCTGCAGGAGCTGTTCTACGACCAGATGCCGGTGTCGATGAGGAGTATGGG CGCGGCGGCTTTTACGAGTTTGTTGGGGATTGGGAGCTTTCTGAATACGTCGGCGATCATGGTGGTTCAAGCGGCGAGTGGCGGCAAGTGGCTGAAGGGG GATGATTTGAATAGGATTGGGTTGGATAAGTTTTATTGGGTGCTGGCTGGGATGAGCGTGGTGAATCTCTGTGTTTACATGTTGATTGCTAAGGGTTTTG TTTATAAGAGATCATCTGGTGCTGACGGCGGCGGAGGAGATGGTGTAGAAGAAGGGAAGGAGTTGGGGTTTATTGGAGGGAAGATGGACGAATTTACTCC TCCGACGAGAAAGGTTGACTACCGTTGA
AA sequence Show only first row Show all	>Lus10024156 pacid=23141486 polypeptide=Lus10024156 locus=Lus10024156.g ID=Lus10024156.BGIv1.0 annot-version=v1.0 MDSSVAPAALEETGGGNQKNTKESQKGGWNAAFFIIFVEMAERFAFYGLSGNLITYLTGHLHQPTVTAVKNINTWVGVSSLFPIVGAVVADSYLGRFTTI LLASSIYFTGMVLLTLSVSVVPMSHREAVFFTALYVLAVGEGGHKPCVQTFAADQFDEDKPDEKAAKSSFFNWWYLGIVFGASAAVLLVTYIQDNVGWTE GLGILAVALGAALVVFLIGIKTYRKGSPYTRVAQVVVAAMRKRRVDASGGECIMCYEEEENDVEVKPRMGRTNQFRFLDKAAIMDSSSSTTGGGSRIRNP RRVCTVGQVEEVKPLIRLIPIWLSCLMFTVVLTQNHTFYVKQATTLDRSLSKNFQIPPASLQSLIGLTILITVPLYDRVFVPFARRFTGHPSGISVLQRI GFGLFLSIVEASVAALVETRRLHVTHPMSVWWLIPQYAVSGMSDAFTVVGLQELFYDQMPVSMRSMGAAAFTSLLGIGSFLNTSAIMVVQAASGGKWLKG DDLNRIGLDKFYWVLAGMSVVNLCVYMLIAKGFVYKRSSGADGGGGDGVEEGKELGFIGGKMDEFTPPTRKVDYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54450			Major facilitator superfamily ...		Lus10024156 [exp]	0	1
AT1G70420			Protein of unknown function (D...		Lus10002380 [exp]	1.4	0.9684
AT1G05060			unknown protein		Lus10030021 [exp]	4.9	0.9641
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043156 [exp]	7.2	0.9660
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10008112 [exp]	11.0	0.9577
AT3G59310			Eukaryotic protein of unknown ...		Lus10026744 [exp]	12.0	0.9510
AT1G58070			unknown protein		Lus10015482 [exp]	12.5	0.9609
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012143 [exp]	14.5	0.9608
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10013549 [exp]	16.1	0.9566
AT3G13480			unknown protein		Lus10013407 [exp]	16.6	0.9380
					Lus10013034 [exp]	16.9	0.9502

Compare expression of checked genes

Lus10024156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.