Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19420 1217 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 1188 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 818 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 815 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G23270 748 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 735 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G47660 697 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G76950 614 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G65920 486 / 2e-154 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G63860 179 / 2e-48 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039525 [exp] 1690 / 0 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036030 [exp] 1233 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 1160 / 0 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10016335 [exp] 1152 / 0 AT5G19420 971 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10002751 [exp] 1132 / 0 AT5G19420 949 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10018904 [exp] 836 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10028600 [exp] 832 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10042800 [exp] 746 / 0 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036737 [exp] 744 / 0 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124906 [exp] 1365 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 1365 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 1342 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 1279 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 1248 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.002G070300 [exp] 862 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G190000 [exp] 771 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 758 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G080900 [exp] 537 / 4e-173 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.017G139600 [exp] 536 / 2e-172 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10024157 pacid=23141568 polypeptide=Lus10024157 locus=Lus10024157.g ID=Lus10024157.BGIv1.0 annot-version=v1.0 ATGATGTTTCCTACTGATAGAGTGGCTGCGGCTGCTGAACAGTCAAGAGCGGGTCCTATGGAGAGAGACGTTGAGTTGGCAATCACTGCTCTTAAAAAGG GCTCTCAACTTCTCAAGTATGGACGCAGAGGAAAACCGAAGTTTTGTCCCTTCAGGCTGGCTAATGATGAATCTGCTCTGATATGGTTGGCAGATAAAGA GGAGAAGCATCTTAAACTTAGCCATGTTTCTAGAATTGTCCCTGGTCAGCGTACACCAATATTTCAGAGATATCCTCGACCAGAAAAGGAATATCAGTCG TTCTCTCTGATATATCATGAACGGTCTCTGGATGTGATATGTAAGGACAATGATGAAGCTGAAGTATGGATTACTGGTCTGAAAGCACTAATACAACGTA TCAAGAAGCGGAGAGATGAATCTCGGAGCGATGGGATCATGTCTGGAACAACTAGTCCAAGAGGACAGACGCAGAGAAGTTCTCCTTTGAGTTCTGCCTT TCATAGTGCTGACGGTTCACATAAGGACGAAGTGGATCCTTTTCGCCTATGTATCCCCTATGACAGTCCTTCCAAGATGGGGTTGGAGAAGGAACTATCT GAAGTTATGTCATATCCTCTGCCTCCCAGGGCTTTCTTTCTTCCAGAATCTTCTGGTGGATCCGTTCATTCTCTGTCATCAGGGGGCTCAGATGGAATTG TTGGGCGTATGAAGGGTATGAATGTAGATACTTTTAGAGTGAGCTTATCTAGTGCTGTCAGTTCCTCAAGCCAAGGTTCTGGTCATGATGACAGTGACGC ATTAGGTGATGTATATATGTGGGGAGAAGGAACTGGAGATGGCATTTTGGGTGGAGGAGTGCACAGAGTTGGTGATTCAAGCCTTGCCATGGACTCTTTT GTTCCAAAACCCTTAGATTCTGCAGTCATATTGGATGTTCAAGCTATAGCTTGTGGTAGGCGTCATGCTGCTCTAGTGACGAGACAAGGAGAAGTTTTCA CTTGGGGTGAGGAACTTGGAGGCAGACTTGGACATGGTATAGATTCTAATGTCTTACATCCTAAGCTTTTAGATGGGCTTAAAAACATCAATGTTGAGCT AGTTGCTTGTGGAGAGTATCATTCCTGTGCAGTATCCCTCTCCGGCGACCTGTACCTTTGGGGTAATAGTGCATCCAGTCTGAAGCTCAATGGATATGGA ACTGAAGTAAGTCAATGGGGTCCAAGAAAGGTAAATGGGCCTCTGGAAGGGATTCCTGTGTCTTCAGTTTCATGTGGACCTTGGCACACTGCTGTCGTAA CTTCAGCAGGTCAATTGTTCACTTTTGGAGATGGAACCTTTGGAGTTTTAGGACATGGTGACCGTAAAAGTATGTCCATGCCACGGGAAGTGGAGTCCCT TAAGGGCCTCCGAACAATTCGAGCAGCATGTGGTGTATGGCACACTGCTGCAGTTGTAGAAGTAATGGTTGGATCTTCCAGTACGAACAATTGCTGTTCA GGGAAGCTATTCACCTGGGGAGATGGAGATAAAGGTCGTCTAGGCCATGGTAATATAGAGGCAAAACTGGTCCCGACCTGTGTGGCTGCTCTTGGTGAAT CTAACTTCTGTCAAGTTGCCTGTGGACACAGCATGACCGTTGCACTTACAACCACAGGACATGTTTACACGATGGGAAGCCCTGTGTATGGTCAGCTAGG GAGTCCTCAAGCTAGCTTCAAGGCACCTACTCGTGTAGCGGGGAAACTTACTAATAATTTTGTTGAGGAATTGGCATGTGGTGCCTTTCATGTTGCTGTT TTAACTTCGAAGACTGAGGTTTATACTTGGGGAAAAGGTTCAAATGGTCGATTAGGACATGGTGATACAGATGATAGGAATTCTCCAACGTTAGTTGAAG CTTTGAAGGATAAACAGGTCAAGAGTATTGTTTGTGGTACTAGTTTGACAGCAGCTATTTGTCTTCACAAATCAGTATCAGGTGTTGATCAATCAATGTG CTCTGGTTGCCGCCTACCATTTAATTTCAAAAGGAAACGACATAACTGCTATAACTGTGGCCTTGTCTTTTGCCATTCATGCAGTAGTAGAAAGTCTCTA AAGGCTGCAATGGCACCAAATCCAAACAAAACCTATCGTGTCTGTGACCATTGTTATGGGAAACTTAGAAAAGCTACTGAAAGCGAGGCATCATCGCAGT CCAATGTAAGAAAAGGAATTGTTGGCCAGGGTGGAAATGAAGCTATTGGGAGGACTGAAACTATGGCTTCAAAGCCGCACATGCATCTCGGAAGAAAATT TTCTCTCGAGTCAACTATAGACGTGGAAAGTGGATTTACCAGAAGAAACAAGAAACCGAGTTCCACTAGCACCCAAGTTTCCCCCACTGCAAACGGTTAT AAACACAACCCTTTCCATAACTCCAAGTCGTTTGGATCATCCAAGAAATTTTTCTCTGCTTCGCTTCCTGGATCAAGAATTGTGTCTAGAGCAACGTCAC CGACATCAAGACGATCCAGTCCACCCCGTGCTACAACTCCGTCTCCGGTTCTTGCCAAACATGCAGTGCCAATTGTTGGTGTAGACGAGGCTAAAAAGAT AAATGATGGCTTGAGTGGAGAAGTTGCTAAATTAAGAGCTCAGGTTGAAGAGCTCACTTGCAAAGCTCGGGTTCAGGAGGATGAACTGCAAAGAGTAACT GGACAGCTGAACGAAGCTATTGCTTCAGCAGAGGAGCAAAGTGCAAAATGTAAAGCAGCCAAGGAAGTGATTAAATCACTTACTGCTCAACTTAAGGATG TAGCTGAAAGATTGCATGTTGGAGCAGCAAGAAGCATTACTCCTTTAGGTTCCCATAACACCAGCACTAGTCCTCGTGATGTTTCTTCAGAAGCTTTTGG GCAATTGAGCTGTATCACGGGCAGGCAGGAACTCGATTCAAATGGTGTAAATAGCATTGTGATTTCCCAAGGTTCAGCTACCTCGAGTAGTCGAAATTCA AATCTCTGTGAATTGGTGAATGGGGAAACGACTGGCAGGAGTAAGAACAGAATTTCAAAAATTGAACCCTGCCAGAAGGATGAATGGGTTGAACAAGATG AACCCGGTGTCTATATCACGCTAGTATTGTTGTCTGGAGGCGCCAAAGATCTAAAGCGAGTTCGGTTCAGCCGAAAACGGGTCAGGGGGAAGCAAGCAGA ACAATTGGGGACAGTCATGGCCTCACTTCTTTCTTTTTACAGTGCCTTTCTTGTACGTGGCTTGCGGCATCCCTTCATTTACACCAATCAGTTTGCTGTT TTGTATGTACTCAGCAGTATCTCCCTCTCGCTCTCTTGA
AA sequence Show only first row Show all	>Lus10024157 pacid=23141568 polypeptide=Lus10024157 locus=Lus10024157.g ID=Lus10024157.BGIv1.0 annot-version=v1.0 MMFPTDRVAAAAEQSRAGPMERDVELAITALKKGSQLLKYGRRGKPKFCPFRLANDESALIWLADKEEKHLKLSHVSRIVPGQRTPIFQRYPRPEKEYQS FSLIYHERSLDVICKDNDEAEVWITGLKALIQRIKKRRDESRSDGIMSGTTSPRGQTQRSSPLSSAFHSADGSHKDEVDPFRLCIPYDSPSKMGLEKELS EVMSYPLPPRAFFLPESSGGSVHSLSSGGSDGIVGRMKGMNVDTFRVSLSSAVSSSSQGSGHDDSDALGDVYMWGEGTGDGILGGGVHRVGDSSLAMDSF VPKPLDSAVILDVQAIACGRRHAALVTRQGEVFTWGEELGGRLGHGIDSNVLHPKLLDGLKNINVELVACGEYHSCAVSLSGDLYLWGNSASSLKLNGYG TEVSQWGPRKVNGPLEGIPVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSMSMPREVESLKGLRTIRAACGVWHTAAVVEVMVGSSSTNNCCS GKLFTWGDGDKGRLGHGNIEAKLVPTCVAALGESNFCQVACGHSMTVALTTTGHVYTMGSPVYGQLGSPQASFKAPTRVAGKLTNNFVEELACGAFHVAV LTSKTEVYTWGKGSNGRLGHGDTDDRNSPTLVEALKDKQVKSIVCGTSLTAAICLHKSVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSRKSL KAAMAPNPNKTYRVCDHCYGKLRKATESEASSQSNVRKGIVGQGGNEAIGRTETMASKPHMHLGRKFSLESTIDVESGFTRRNKKPSSTSTQVSPTANGY KHNPFHNSKSFGSSKKFFSASLPGSRIVSRATSPTSRRSSPPRATTPSPVLAKHAVPIVGVDEAKKINDGLSGEVAKLRAQVEELTCKARVQEDELQRVT GQLNEAIASAEEQSAKCKAAKEVIKSLTAQLKDVAERLHVGAARSITPLGSHNTSTSPRDVSSEAFGQLSCITGRQELDSNGVNSIVISQGSATSSSRNS NLCELVNGETTGRSKNRISKIEPCQKDEWVEQDEPGVYITLVLLSGGAKDLKRVRFSRKRVRGKQAEQLGTVMASLLSFYSAFLVRGLRHPFIYTNQFAV LYVLSSISLSLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19420			Regulator of chromosome conden...		Lus10024157 [exp]	0	1
AT5G19420			Regulator of chromosome conden...		Lus10039525 [exp]	1.4	0.9439
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10028113 [exp]	7.1	0.9258
AT5G44530			Subtilase family protein (.1)		Lus10038416 [exp]	7.4	0.9130
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10001714 [exp]	9.2	0.9067
AT3G10650		AtNUP1	unknown protein		Lus10034137 [exp]	11.6	0.9241
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10031904 [exp]	12.2	0.8916
AT1G76740			unknown protein		Lus10028114 [exp]	16.1	0.9151
AT5G11560			catalytics (.1)		Lus10022143 [exp]	16.7	0.9147
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10013744 [exp]	16.7	0.9185
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	17.2	0.9216

Compare expression of checked genes

Lus10024157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.