Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54460 790 / 0 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) AT5G22750 140 / 1e-34 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT5G43530 114 / 4e-26 Helicase protein with RING/U-box domain (.1) AT1G61140 76 / 4e-14 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) AT1G02670 76 / 5e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G05120 75 / 1e-13 Helicase protein with RING/U-box domain (.1) AT3G20010 73 / 3e-13 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G50410 73 / 3e-13 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) AT1G11100 69 / 5e-12 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2) AT5G05130 68 / 1e-11 DNA/RNA helicase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039526 [exp] 553 / 0 AT3G54460 499 / 9e-158 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) Lus10043365 [exp] 142 / 3e-35 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10041156 [exp] 107 / 7e-24 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10018465 [exp] 85 / 1e-16 AT1G61140 546 / 2e-175 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10011211 [exp] 80 / 3e-15 AT1G61140 959 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Lus10030044 [exp] 75 / 1e-13 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10041008 [exp] 74 / 3e-13 AT1G50410 1060 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10011033 [exp] 73 / 5e-13 AT1G05490 590 / 0.0 chromatin remodeling 31 (.1) Lus10013452 [exp] 72 / 1e-12 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G197701 [exp] 886 / 0 AT3G54460 1422 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) Potri.T125006 [exp] 886 / 0 AT3G54460 1422 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) Potri.004G189400 [exp] 140 / 1e-34 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.003G083400 [exp] 109 / 1e-24 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.016G034000 [exp] 109 / 1e-24 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033700 [exp] 102 / 2e-22 AT5G05130 710 / 0.0 DNA/RNA helicase protein (.1) Potri.006G035700 [exp] 86 / 4e-17 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.004G037700 [exp] 82 / 5e-16 AT1G61140 1007 / 0.0 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3) Potri.007G000700 [exp] 76 / 5e-14 AT1G50410 1083 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Potri.014G154600 [exp] 73 / 3e-13 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10024158 pacid=23141507 polypeptide=Lus10024158 locus=Lus10024158.g ID=Lus10024158.BGIv1.0 annot-version=v1.0 ATGTCAAGAGCAAGTCTAATTGTTGTGCCAGCAAATCTTGTAGATCACTGGAAAAATCAAATAGAAAAACATGTCTCACCTGGGCAGTTGCGTCTCTGCA TCTGGACAGATCACAAGAGGCCTCCTGCCCACATTCTGGCGTGGGAAAATGATGTTGTTATTACCACCTTTAGTCGTTTAAGTGCAGAATGGGGGCCGAA TAAACGAAGCCCTCTGATGCAGGTACATTGGCTGAGGATCATGTTAGATGAGGGACACACACTCGGATCTAGCCTCAACTTAACAAACAAACTTCAAATG GCTATCTCGCTTACAGCATCAAGTCGCTGGTTGTTAACAGGAACCCCAACACCCAACACACCTAATAGTCAGCTCTCACATCTACAGCCAATGCTTAAGT TCCTACATGAGCAAGTCTACGGACAGAATCACAAGTCATGGGAAGCAGGAATCCTTCGGCCATTTGAGGCAGAACAGGAAGAAGGTCGCCTGCGCTTATT GGAATTGCTACACAGGTGTTTGATCAGTGCTAGGAAGAAAGACTTGAGAATCATCCCACCCTGCATCAAGAAAGTAGTCTTCCTCGACTTCAACAAGGAG CATGCTAGAAGTTATAATGAATTGGTAGTTACTGTGCGGCGGAATATCCTGATGGCTGATTGGAACGATCCATCGCACATTGAGAGTTTACTTAATCCAA GGCAGCGTAAATTTCGAGCAGCTACTGTCAGAAATGTCAGGTTGTCTTGTTGCGTGGCTGGACATATTAAAGTGAGTGAGGTTGGCGAAGATATTCAGGA AACAATGGATCTTTTAGTCGGAGAGGGTCTTGATCCCGTTTCAGAGGAGTATGCCTTGGTGAAATATTACCTTCAGTTTGGTGGCAACTGTCTCAGATGC AAAGAATGGTGTCGCCTACCTGTCATCACACCATGCAAGCATCTTCTGTGCATAGATTGTGTAGCTCTAGATAGTGAAAGGTGCACTTCTCCGGGATGTA CTCACTTATACGAGATGCAAACTCCATTAACCCGTCCAGAAAATCCAAACCCAAAATGGCCAGTCCCTAAAGATCTGATCGAGTTGCAGCCATCATACAA ACAGGATGACTGGCATCCAGATTGGCAATCTACATCAAGTAGTAAAGTTGCTTACCTAGTGGCCAGGTTGAAAGTTCTGCAAGAGGATAATAGAGCCAGT TGGCATCGTATTTATAAGAAATATGACAGTTTGAACGTAGAGGGACGACAAGGTGACCCTCAGTTAATAAGTGGTTCAACCGGAGAGGAAGACTGCAATT CTACAGCTTACAGGATTGTCCAAGATAAAGTGATAATATTTTCTCAGTTTCTAGAACATATACATGTCATTGAACAGCAGTTAACATTGGCTGGCATAAA GTTCGCTGGGCTTTACAGTCCCATGCATTCTCATAACAAGGTGAAATCACTGGCAACATTCCAGAATGACATGGAGTGTGTAGCTCTGCTAATGGACGGA AGCGCTGCATTAGGCCTTGACTTGAGCTTTGTATCATATGTATTCCTAATGGAACCAATATGGGACAGGAGCATGGAGGAACAAGTGATCAGTCGTGCTC ACCGTATGGGCGCCACTCGCCCAATTCATGTTGAAACATTAGCTATGCACGGTACGATTGAAGAGCAAATGGTGGAGTTTCTCCAGGGTGAGCATTTGAA ACAAGAACACAAGGAGAGACCAGAGCAGGAAGGAGCTCCTCGAACTCTTCATGACTTTGCGGAGTGCAACTATTTGGCAAGACTTAGCTTCATACGCACG GCTTCTGCCAAAGCATAA
AA sequence Show only first row Show all	>Lus10024158 pacid=23141507 polypeptide=Lus10024158 locus=Lus10024158.g ID=Lus10024158.BGIv1.0 annot-version=v1.0 MSRASLIVVPANLVDHWKNQIEKHVSPGQLRLCIWTDHKRPPAHILAWENDVVITTFSRLSAEWGPNKRSPLMQVHWLRIMLDEGHTLGSSLNLTNKLQM AISLTASSRWLLTGTPTPNTPNSQLSHLQPMLKFLHEQVYGQNHKSWEAGILRPFEAEQEEGRLRLLELLHRCLISARKKDLRIIPPCIKKVVFLDFNKE HARSYNELVVTVRRNILMADWNDPSHIESLLNPRQRKFRAATVRNVRLSCCVAGHIKVSEVGEDIQETMDLLVGEGLDPVSEEYALVKYYLQFGGNCLRC KEWCRLPVITPCKHLLCIDCVALDSERCTSPGCTHLYEMQTPLTRPENPNPKWPVPKDLIELQPSYKQDDWHPDWQSTSSSKVAYLVARLKVLQEDNRAS WHRIYKKYDSLNVEGRQGDPQLISGSTGEEDCNSTAYRIVQDKVIIFSQFLEHIHVIEQQLTLAGIKFAGLYSPMHSHNKVKSLATFQNDMECVALLMDG SAALGLDLSFVSYVFLMEPIWDRSMEEQVISRAHRMGATRPIHVETLAMHGTIEEQMVEFLQGEHLKQEHKERPEQEGAPRTLHDFAECNYLARLSFIRT ASAKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54460			SNF2 domain-containing protein...		Lus10024158 [exp]	0	1
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10020235 [exp]	1.7	0.9070
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10026862 [exp]	2.8	0.9016
					Lus10031452 [exp]	3.2	0.8887
AT4G27510			unknown protein		Lus10004528 [exp]	3.5	0.8905
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037515 [exp]	3.9	0.8933
AT4G32820			Tetratricopeptide repeat (TPR)...		Lus10005496 [exp]	5.2	0.8417
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10037876 [exp]	7.0	0.8836
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10024562 [exp]	7.7	0.8855
AT1G73350			unknown protein		Lus10042294 [exp]	9.4	0.8817
					Lus10010369 [exp]	9.7	0.8014

Compare expression of checked genes

Lus10024158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.