Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54460 538 / 4e-175 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) AT5G43530 47 / 4e-05 Helicase protein with RING/U-box domain (.1) AT5G05130 47 / 6e-05 DNA/RNA helicase protein (.1) AT5G22750 47 / 8e-05 RAD5A, RAD5 DNA/RNA helicase protein (.1) AT2G30470 44 / 0.0006 B3 HSI2, VAL1 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039526 [exp] 999 / 0 AT3G54460 499 / 9e-158 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) Lus10043365 [exp] 57 / 8e-08 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10041156 [exp] 49 / 2e-05 AT5G43530 1222 / 0.0 Helicase protein with RING/U-box domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T125006 [exp] 640 / 0 AT3G54460 1422 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) Potri.003G197701 [exp] 640 / 0 AT3G54460 1422 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) Potri.004G189400 [exp] 51 / 3e-06 AT5G22750 1506 / 0.0 DNA/RNA helicase protein (.1) Potri.016G033600 [exp] 46 / 0.0001 AT5G05130 674 / 0.0 DNA/RNA helicase protein (.1) Potri.003G083400 [exp] 45 / 0.0003 AT5G43530 1342 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.011G144500 [exp] 44 / 0.0003 AT1G19100 114 / 5e-26 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.019G060900 [exp] 44 / 0.0004 AT2G40770 1921 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Potri.016G034000 [exp] 44 / 0.0005 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1) Potri.006G035700 [exp] 43 / 0.001 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07496 [flax] [poplar] zf-CW CW-type Zinc Finger
Representative CDS sequence Show only first row Show all	>Lus10024159 pacid=23141591 polypeptide=Lus10024159 locus=Lus10024159.g ID=Lus10024159.BGIv1.0 annot-version=v1.0 ATGGAGCAAGAAGAGGATCCGTTCCCCGGTCACAAGCTCTGCGGTTATCTATGTGCTGTTCTCTCAGCTTCCTCGCCGGATGACTTCCTGGCGTCTTCTT CGCTTCCCTTTTTATCTCCATGCCGTGCCTTCTCTGACGGAGACCGCGTCGGTTTCGTGACTGAGCAGGATAACGTTTTCCTGTCAACAGTTGCGAGACT TGGTCCGCAGGAAACTGTGGCAGCGGTTTCTGAGAACACGGGAATCAGCTACGAAAATAGGAGTGGGAGTTCAGGGAGGAGGAAGAGCAGTGGCCAAATC GGGGGATGTGTGAGTCGGAATGAGTCCAGGACGAAGAAGAAGGTAGTGAGAGGGATCGGGATGGTGAATGGGAGTTTGAGCGTTGTTCATCAGATTCATT CGCTGGTTACGCATAAGTGTGTGCAGGCCGATGCTCGAGTTTTGCAGGTTCAAGTTCGGGAGAGTGATTGTGATGTGAGAATTGTGGTGCTGGTCGACGT GTATCTGCCGATTGCGCTGTGGTCCGGATGGCAGTTCCCCAGATCAGGGCCGGTTGCCGGTGCTCTGTTCCGACACTTGAGCTGTGATTGGACGAAGAGA AGTATGATGCTTGCTAATCGAGGATCACACGTTGGAGATAACAGTATTTGGAATGTCTCCTCTTGCCATGTTCTTGACTGCAAGGTACACTGTGAGGTCT CTGAGTCTTCTTCTTCTTCCTCCAAGAAGAATCATTTTGGACTACATGAAATTTTTACGAGTCTGCCTAGTTTGGCGAGTAGGGAAAACTACGGTTCTTT GAGAATGGAACCAGCAGATAATTGTCATGGTTCGGGTATTTGGGATGTTGCAGAAGATGTTCTGATAAATATTTTATCAGCTCTTAGCCCATCGGATCTT GTTAGAGTTGCTGCTACCTGTCGTTGCTTGAGATTACTGGTTGTAAGTGTCATGCCGTACATGAAACTTAAATTATTTCCTCATCAAAGTGCTGCTGTTG AGTGGATGTTAGAGAGGGAGGTGAATGAACGATATCTCCCACATCCTTTGTTTATGGAATTCTCAACTAAAGATGGGTTTACTTTTTATCTGAACACAGT CTCTGGTGAGATAGTTGTAGGGGAGGCTCCCTCTGTAAGAGATTTCCGTGGGGGGATGTTCTGTGATGAACCTGGCTTGGGAAAGACGATTACTGCTCTT TCACTTATTCTTAAGACACAAGGAAAATTGGCTGACCCACCAACTGGCGTTCAAATAACGTGGTGTAGACATCATGATGATCAGAGATGTGGCTACTATG AGCTTAATGGTAGTGACCTTTCCTCTATTAGTACACCATTAGGGAAAAGGCATTTGAGCCAGAGTGCTCGGAGGGGTCAATTATCGCTGGATGAGTTCAC TCCTGTTAATGATGTATGTCATTCATCACTTAAAAGAAGAAGATTATTGGAGACCGGAACAAGGGAGCCTCTTATTTCTAACAGAATGCAATCACCAGAA GCTCCAATGTCAGGGATCCTTGGGGAATCTTCTGGATGCACAAGAAGCACGACTTCTGCTAAGAAAAATCTCTTGCTTGCTTATGAAGAAGCATTAGGTG TTTGTTCGAAAAGAAAAGTAGACAGTTCCAAGAAGAGAAAGCGTGGACACCCTCAGATGTCTAATGAGACTTGGGTTCAATGTGATTCCTGCAGAAAGTG GAGGAAGCTTTCAACTCCCGTAAATGATGTGGGCGCTGCATGGTTTTGTAGTATGAACGCTGACACCACACATCAAAGCTGTAAAGATCCTGAGGAATCA TGGGACAAATCTGAGTCTGTCACAGACATGCTTGGGTTTCACAGCAAAGGAACTTCTGGGGCGAATGAGCAAAACACATCATTTTTCGTTAACGTTCTCA AGGAGTATCGTTCAGCAATGAATTCAAAAACAAAGAAAGCCTTAACGTGGCTGGCTAAACTTTCTGCTGATAGACTCTCTTTAATGGAAACTGTTGGATT GGTAAGTCCAGTTCTAGAATCTGGTTCAGTATCTGGTAATGGATATGCTCTTGCGTTCCACAAAATATTTCTAGAGTTTGGTTCGGTAAAGAGGATAGTG AAGAATGTTACTAGATGGTATTATCCTCCTAATCTTGACAGCTTGATATTTGATTTGAATGCTCAGACTTGCTCGTTGTGCACCACTTGA
AA sequence Show only first row Show all	>Lus10024159 pacid=23141591 polypeptide=Lus10024159 locus=Lus10024159.g ID=Lus10024159.BGIv1.0 annot-version=v1.0 MEQEEDPFPGHKLCGYLCAVLSASSPDDFLASSSLPFLSPCRAFSDGDRVGFVTEQDNVFLSTVARLGPQETVAAVSENTGISYENRSGSSGRRKSSGQI GGCVSRNESRTKKKVVRGIGMVNGSLSVVHQIHSLVTHKCVQADARVLQVQVRESDCDVRIVVLVDVYLPIALWSGWQFPRSGPVAGALFRHLSCDWTKR SMMLANRGSHVGDNSIWNVSSCHVLDCKVHCEVSESSSSSSKKNHFGLHEIFTSLPSLASRENYGSLRMEPADNCHGSGIWDVAEDVLINILSALSPSDL VRVAATCRCLRLLVVSVMPYMKLKLFPHQSAAVEWMLEREVNERYLPHPLFMEFSTKDGFTFYLNTVSGEIVVGEAPSVRDFRGGMFCDEPGLGKTITAL SLILKTQGKLADPPTGVQITWCRHHDDQRCGYYELNGSDLSSISTPLGKRHLSQSARRGQLSLDEFTPVNDVCHSSLKRRRLLETGTREPLISNRMQSPE APMSGILGESSGCTRSTTSAKKNLLLAYEEALGVCSKRKVDSSKKRKRGHPQMSNETWVQCDSCRKWRKLSTPVNDVGAAWFCSMNADTTHQSCKDPEES WDKSESVTDMLGFHSKGTSGANEQNTSFFVNVLKEYRSAMNSKTKKALTWLAKLSADRLSLMETVGLVSPVLESGSVSGNGYALAFHKIFLEFGSVKRIV KNVTRWYYPPNLDSLIFDLNAQTCSLCTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54460			SNF2 domain-containing protein...		Lus10024159 [exp]	0	1
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10020233 [exp]	1.0	0.9685
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007174 [exp]	3.2	0.9667
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10041413 [exp]	3.6	0.9488
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10010314 [exp]	4.0	0.9596
AT5G64270			splicing factor, putative (.1)		Lus10033347 [exp]	4.6	0.9541
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	7.1	0.9655
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010375 [exp]	7.3	0.9436
AT5G09470		DIC3	dicarboxylate carrier 3 (.1)		Lus10024540 [exp]	12.2	0.9554
AT5G42390		SPP	stromal processing peptidase, ...		Lus10021970 [exp]	12.6	0.9148
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Lus10040555 [exp]	13.3	0.9110

Compare expression of checked genes

Lus10024159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.