Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024160 pacid=23141552 polypeptide=Lus10024160 locus=Lus10024160.g ID=Lus10024160.BGIv1.0 annot-version=v1.0 ATGGCGAGAGATAGTTGCTTGACGCGTGTCGTTGCCGGCGTTGCCATCGGCGGTGGTGTTGGTGGCGCTGTAGGGAAAGAAGTTAGTTTCTGTTTACTGA GCTTGGCTGTGTCAATAACGATGGACATATGGAATATCTATGCTGTTTGCTTCTTGTTCCAAGTTAATGGAATTCAGTCTAGAGCCAGAAGTGCTGTATA TGGAACTTATGAGGCCATTAGGCATAAGCTGAAATACAATCTGGGAGAAGATCAGCAGCCAGGAACTCTTCCATGGTGGAAACCCATAGACGATATGCAG GAATACCATTTATGA
AA sequence Show only first row Show all	>Lus10024160 pacid=23141552 polypeptide=Lus10024160 locus=Lus10024160.g ID=Lus10024160.BGIv1.0 annot-version=v1.0 MARDSCLTRVVAGVAIGGGVGGAVGKEVSFCLLSLAVSITMDIWNIYAVCFLFQVNGIQSRARSAVYGTYEAIRHKLKYNLGEDQQPGTLPWWKPIDDMQ EYHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10024160 [exp]	0	1
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10037756 [exp]	1.7	0.7682
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036126 [exp]	2.6	0.8104
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10013794 [exp]	6.9	0.7212
					Lus10008440 [exp]	8.1	0.7922
					Lus10013672 [exp]	13.0	0.7477
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026237 [exp]	13.8	0.7246
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10033437 [exp]	13.9	0.6649
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10019858 [exp]	14.1	0.6044
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10008698 [exp]	14.7	0.6618
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10026128 [exp]	15.2	0.7039

Compare expression of checked genes

Lus10024160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.