Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28345 1233 / 0 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28390 1215 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28380 1210 / 0 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28415 1177 / 0 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28360 1176 / 0 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT2G36910 996 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT3G28860 961 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G02520 928 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT5G46540 922 / 0 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT1G10680 914 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039533 [exp] 2425 / 0 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10035834 [exp] 1471 / 0 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10043069 [exp] 1376 / 0 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10039458 [exp] 1234 / 0 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10041565 [exp] 1234 / 0 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10005839 [exp] 1233 / 0 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10012959 [exp] 1034 / 0 AT3G28345 1325 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10023929 [exp] 1013 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10030674 [exp] 971 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G133800 [exp] 1492 / 0 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G417600 [exp] 1464 / 0 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G074000 [exp] 1254 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074400 [exp] 1251 / 0 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 1241 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074101 [exp] 1195 / 0 AT3G28345 1231 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141400 [exp] 1182 / 0 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141300 [exp] 1114 / 0 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G087100 [exp] 1085 / 0 AT3G28345 1259 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.016G093600 [exp] 1009 / 0 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10024162 pacid=23141458 polypeptide=Lus10024162 locus=Lus10024162.g ID=Lus10024162.BGIv1.0 annot-version=v1.0 ATGGTGGGAAATGGGAAAGGCGGCCTTTTTCGCCACAAAGATCCGGTGGACATGGCGCTGATGCTGCTTGGAACACTGGGGAGCATTGGGGATGGATCCA TGACTCCACTTACTATGTACATTTTGAGTTCTGTCATCAATGACTATGGTGGCTCTCAGTTGGCTGGCTCTGAGAAGACCGTTGAAAAGTATGCTTTGAG GTTGCTCTTCCTCTCCTTCCTAGTTGGTGCATCAGCTTTCTTAGGAGGAGTTTGTTGGACAAGAACAGCTGAGAGGCAGACATCTCGTATGAGAATTGAG TACCTTAAAGCAGTACTAAGACAGGAAGTTGGATTCTTTGATGGAGAATCTGCTACTTCTAGTACTTTCCAAGTCATCTCTGTCATCTCTTCTGATGCTC ATTTGATCCAGGACACCATAGCTGAAAAGATACCAAACTGCCTTACACATCTCACTTCATTCATCGCGAGCATTGTGGTTGCGTTCTTGCTGTCATGGCA ACTGGCTATATCAGCATTGCCATTCGCGGTCTTGTTTATCGCGCCAGGACTTGGGTTTGGGAAGCTGCTGATGAAATTAGGAAGCAAAGCCAAAGAAGCA TACGAAGTAGCTGGCGGAATTGGTGAGCAAGCAATCTCCTCGATCCGGGTTGTTTACTCGTATGTCGGAGAGGTCCAAACCTTGGAGAGATTCAGCAATG CACTTGAGAGGAGCTTGGAGATTGGGATCAAACAAGGCTTGACTAAAGGTTTGCTGCTGGGAAGCATGGGGATAGTTTATGGAGCTTGGGCCTTCCAAGC TTGGGTTGGAAGTTATCTAGTCACCGAAAAGGGCCAAAAGGGCGGTGCTGTTTTCGTCGCAGGCGCCTGTATCATCATTGGAGGAGTGTCAATTATGAAT GCACTTCCCAATCTATCATTCATCTCACAAGCATTGCTGGCTTCTTCAAGGATGAATGAAATGATTGACAGAATCCCATCAATAGATTCTGAAGGCGACG AGAACAACAACAAGGTCCTGCCACGAGTGAAAGGCGACATCGACTTCCAGGATGTTCATTTCAGCTACCCATCTAGACCAGATTCTCTGGTTCTCAATGG ATTCAGCCTTGTAATTCATCATGGAGAAACTGTGGCTCTTGTCGGAGGAAGTGGTTCAGGAAAGTCCACTGTCATTGCATTGCTGGAGAGGTTCTATGAT CCTGTGGAAGGCAGCATTTTCCTTGATGGTTATGACATAAAGACACTTGAGCCTAAATGGTTAAGATCCCAGATGGGGCTGGTGAATCAAGAACCAATTC TTTTCGCAACGACCATTCATGAGAACATTCTGTTTGGAAATGAAGAAGCCACTGAGAAACATGTTGAAAAAGCGGCAATGGCTGCAAATATACATGACTT CATCGTCAAGTTACCTAATGGATACCAAACACAGGTGGGACAATTTGGATTCCAGCTTTCCGGAGGGCAGAAGCAAAGGATAGCCATAGCACGAGCTTTG AGTAGAAATCCCAAGATTCTTCTTCTAGATGAAGCCACAAGTGCATTGGATGCAGAATCTGAGAAGGTAGTCCAAAGTGCTTTGGATAAAGCCTCGGTGG GGAGGACAACAATCATCGTTGCTCATCGCCTGGCAACTGTACGAAAGGCCGACTTGATAGTGGTACTTCAATCTGGGAACATTGTTGAATCAGGTAGCCA TGGTGAGCTGATTGAGTTGAACAATGGGGAAGATGGAGCTTACAACAAAATGTTGAGATTGCAGCAATCAGCAGATCAAAGACCAGGCGAACATGGTCAA AATAGAATCATCATGACTCCTCATCCTCCGCAGACTCCAGTAAGTGGATCAAGCTGTGAAGGTAGCCCACATGCCTTGAGCCCAGTTTTCTCTGTAAATC TGGTAACTCCAGTCCAAACATACATCCACCATCAAAATGACAGGAACAATAAAAACAAGTCAATATCATCCTCTCTTCCACCTTCTCAATGGAGGCTGCT GAGAATGAATGCTCCCGAATGGAAGAGAGGGTTACTCGGCTGCATAGGATCTGCAGTGGTCGGAGCAATTCAGCCAGCTCATGCATTTTGTTTAGGATCA GCTCTGTCAGTATACTTCTCTGGAGACAATAGCTACATCAAATCAGAAACCATAACTTACTGCCTACTCTTCGTAAGCTTCGCAGTTCTCAGCTTCACTT TCAACATCGTCCAGCATTATAACTTCGCAATCATGGGGGAGAAGCTAGTCAAAAGGGTACGAGAGAAGATGGTGGAAAAAATGCTCACCTTTGAGATCGG TTGGTTTGATCAAGAAGAGAACACAAGTGCTGCAATTTGTGCTCAGATAGCCAATGAAGCACAGCTGGTCCGGTCTCTAGTCGGAGATCGAATGTCGTTG CTGATTCAGATATGTTTCAGTGCTTCCATTGCCTTTATTGTCAGTCTGGCTGTCACGTGGAGACTATCAATCGTCATTATAGTCATCCAGCCATTAATCA TTGGAAGCTTTTACTCAAGAAGCGTGCTCATGAAGAAAATGTCCGAAAAGGCTCGATCGGAGCAACGAGAGGGAAGTCAATTAGCCAGTGAAGCAATCAT CAACCATAGAACTATCACTGCCTTTTCATCTCAGAGGAGGATATTAGGATTGTTTGCAAAAACCATGGAAGGACCCAAGAAGGAGATTGTTAAACAGTCA TGGATTTCAGGTTTCGGGATGTGTTGTTCCCAATTCCTGACCACTGCATCCATGGCACTAACTTACTGGTATGGTGGGAAGTTATTGATTCAAGGATCGA TTACCCCCAAACACCTTTTCCAGGCGTTCTTCCTTCTGATGAGTACTGGTAAGAACATTGCTGATGCTGGAAGCATGAGTACTGATATAGCCAAAGGTGG TGATGCCATCAGATCAGTCTTTGAAACCCTGGACAGGGAAACCGAGATTGATCCAGACGATCCGAAAGGGAAAAAAGTGAGGAAACAAGTTAAAGGAAAG ATTGAGCTTGATAAGATATTTTTCAATTACCCAGCAAGGCCTGATCAAACAATCTTCAAAGATCTTAGCCTAACAATTGAAGCTGGAAAGACAATAGCTC TTGTGGGACCAAGTGGTTCTGGAAAGTCCACCATTCTTGCACTCATAGAAAGGTTTTATGATCCACAAAGTGGCACAGTGCTAATAGATGGACGTGACAT TAAGAGCTACAACTTGAGAAAGCTGAGATCTTTTATTGGATTGGTGAGCCAGGAACCGGCTCTGTTCGCTGGAACAATTCGTGATAACATTGCTTATGGA AATTCCAGTACTGCTACAGAAGCCGAGATCAGAAGGGCTGCAATCCAAGCCAATGCTCATCAGTTCATCAGCACACTGAAAGACGGGTACGATACAAACT GTGGAGAAAGAGGAATGCAGTTGTCAGGAGGACAGAAGCAAAGAATAGCATTGGCGCGGGCCATCCTGAAGAACCCGGCAATCCTGCTTCTGGATGAAGC AACAAGTGCACTCGATAGCATATCGGAGAACCTTGTACAAGAAGCATTGGAGAAGATGATGGTTGACAGGACATGTGTTGTCGTTGCTCACAGGTTAGCC ACAATACAGAAGGCAGAAATTGTAGCTGTGGTCAAGAAGGGAAAAATTGCAGAAGAAGGTTCACATAGGAATCTCATTGCCTTGCATGGTATTTACTATT CTTTGGTTAAGGCTCAAGGTGGGAATTCTCCTTACAGGTGA
AA sequence Show only first row Show all	>Lus10024162 pacid=23141458 polypeptide=Lus10024162 locus=Lus10024162.g ID=Lus10024162.BGIv1.0 annot-version=v1.0 MVGNGKGGLFRHKDPVDMALMLLGTLGSIGDGSMTPLTMYILSSVINDYGGSQLAGSEKTVEKYALRLLFLSFLVGASAFLGGVCWTRTAERQTSRMRIE YLKAVLRQEVGFFDGESATSSTFQVISVISSDAHLIQDTIAEKIPNCLTHLTSFIASIVVAFLLSWQLAISALPFAVLFIAPGLGFGKLLMKLGSKAKEA YEVAGGIGEQAISSIRVVYSYVGEVQTLERFSNALERSLEIGIKQGLTKGLLLGSMGIVYGAWAFQAWVGSYLVTEKGQKGGAVFVAGACIIIGGVSIMN ALPNLSFISQALLASSRMNEMIDRIPSIDSEGDENNNKVLPRVKGDIDFQDVHFSYPSRPDSLVLNGFSLVIHHGETVALVGGSGSGKSTVIALLERFYD PVEGSIFLDGYDIKTLEPKWLRSQMGLVNQEPILFATTIHENILFGNEEATEKHVEKAAMAANIHDFIVKLPNGYQTQVGQFGFQLSGGQKQRIAIARAL SRNPKILLLDEATSALDAESEKVVQSALDKASVGRTTIIVAHRLATVRKADLIVVLQSGNIVESGSHGELIELNNGEDGAYNKMLRLQQSADQRPGEHGQ NRIIMTPHPPQTPVSGSSCEGSPHALSPVFSVNLVTPVQTYIHHQNDRNNKNKSISSSLPPSQWRLLRMNAPEWKRGLLGCIGSAVVGAIQPAHAFCLGS ALSVYFSGDNSYIKSETITYCLLFVSFAVLSFTFNIVQHYNFAIMGEKLVKRVREKMVEKMLTFEIGWFDQEENTSAAICAQIANEAQLVRSLVGDRMSL LIQICFSASIAFIVSLAVTWRLSIVIIVIQPLIIGSFYSRSVLMKKMSEKARSEQREGSQLASEAIINHRTITAFSSQRRILGLFAKTMEGPKKEIVKQS WISGFGMCCSQFLTTASMALTYWYGGKLLIQGSITPKHLFQAFFLLMSTGKNIADAGSMSTDIAKGGDAIRSVFETLDRETEIDPDDPKGKKVRKQVKGK IELDKIFFNYPARPDQTIFKDLSLTIEAGKTIALVGPSGSGKSTILALIERFYDPQSGTVLIDGRDIKSYNLRKLRSFIGLVSQEPALFAGTIRDNIAYG NSSTATEAEIRRAAIQANAHQFISTLKDGYDTNCGERGMQLSGGQKQRIALARAILKNPAILLLDEATSALDSISENLVQEALEKMMVDRTCVVVAHRLA TIQKAEIVAVVKKGKIAEEGSHRNLIALHGIYYSLVKAQGGNSPYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10024162 [exp]	0	1
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10026948 [exp]	5.3	0.8420
AT5G12000			Protein kinase protein with ad...		Lus10006021 [exp]	7.9	0.8409
AT2G39440			unknown protein		Lus10018300 [exp]	9.1	0.8892
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Lus10022570 [exp]	11.6	0.8060
AT4G15690			Thioredoxin superfamily protei...		Lus10002887 [exp]	11.9	0.8575
AT2G39440			unknown protein		Lus10040607 [exp]	12.1	0.8755
					Lus10021186 [exp]	16.9	0.7632
AT2G41110		ACAM-2, ATCAL5,...	calmodulin 2 (.1.2)		Lus10021487 [exp]	22.4	0.8542
AT1G27990			unknown protein		Lus10015763 [exp]	23.2	0.8338
AT3G22040			Domain of unknown function (DU...		Lus10007504 [exp]	23.5	0.7206

Compare expression of checked genes

Lus10024162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.