Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59560 295 / 1e-100 SRR1 SENSITIVITY TO RED LIGHT REDUCED 1, sensitivity to red light reduced protein (SRR1) (.1), sensitivity to red light reduced protein (SRR1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039536 [exp] 534 / 0 AT5G59560 295 / 2e-100 SENSITIVITY TO RED LIGHT REDUCED 1, sensitivity to red light reduced protein (SRR1) (.1), sensitivity to red light reduced protein (SRR1) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G198000 [exp] 337 / 4e-117 AT5G59560 320 / 2e-110 SENSITIVITY TO RED LIGHT REDUCED 1, sensitivity to red light reduced protein (SRR1) (.1), sensitivity to red light reduced protein (SRR1) (.2) Potri.T125306 [exp] 335 / 5e-116 AT5G59560 315 / 2e-108 SENSITIVITY TO RED LIGHT REDUCED 1, sensitivity to red light reduced protein (SRR1) (.1), sensitivity to red light reduced protein (SRR1) (.2) Potri.001G026700 [exp] 325 / 2e-112 AT5G59560 317 / 3e-109 SENSITIVITY TO RED LIGHT REDUCED 1, sensitivity to red light reduced protein (SRR1) (.1), sensitivity to red light reduced protein (SRR1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07985 [flax] [poplar] SRR1 SRR1
Representative CDS sequence Show only first row Show all	>Lus10024163 pacid=23141504 polypeptide=Lus10024163 locus=Lus10024163.g ID=Lus10024163.BGIv1.0 annot-version=v1.0 ATGGCTTCATCTGCCGAAGTTCTTTCCCCTGAAAAGCGTGCTCTGAACGATGGATGGACAATAGTGTTGCCTCGTAGCAATAGACGCAGTAGAAAGTTAC CTAAACTTAAACCTCTGGAGGAACAAGGAAGATCATGGATTCCAGCTGATACCAAATCCGATGAAGAGAGACAATCAAAGTTGATGCAGAAGATGGTTGT CTGTATGAAGAGAGTAGAGAAGTCTGCCTTCGGTCAGAAGTTTTTGGAACAAATGCAAAGCCAAGAAATAACAGACCGTTTCTATAAGGTTCTGGGTTCG GAACAGAAGATGCAAATGGTGATATATGGCATTGGCAGCATAGAATCACACGAAACCCCTCGACTTCAACTCAGCATTGCCCTCCTGATGAAGACGAAGT TCAGTTGGATTGGACACGTAGAAGTGTTCGATCCAGTCCTTTCAGCTACAGAGTGCAGAGTTCTCGAAGTCCTCGGCTGCTCGGTTCTCTCTGTAAACGA ACAAGGCGAACGACGAGCAACAAAGCCGACGCTGTTTTATATGCCCCATTGTGAAGCAGGGCTTTATAACAACCTTCTAAGAGCGAACTGGGAAGTGGAG GCATTGAATAGAATGTCATTGTTTGGTAACAGCTTCCGGGTTTATCGAGAGTATGCTTCGTTGAAGAACCTGGTAGTGGTGGATTCGAGCCACATTATAG CTGTTGAAGGCGTGACAGAGGAGTTTGGAGTGAGCACTGTGTGGGAAGATTATTTTGCAGGTTTTCATGACTCGAGCTGGCATTTTTTCATGCCGGGTGG AGATGAAGTCCTGCCATTGTTAGATAGGAAGTAA
AA sequence Show only first row Show all	>Lus10024163 pacid=23141504 polypeptide=Lus10024163 locus=Lus10024163.g ID=Lus10024163.BGIv1.0 annot-version=v1.0 MASSAEVLSPEKRALNDGWTIVLPRSNRRSRKLPKLKPLEEQGRSWIPADTKSDEERQSKLMQKMVVCMKRVEKSAFGQKFLEQMQSQEITDRFYKVLGS EQKMQMVIYGIGSIESHETPRLQLSIALLMKTKFSWIGHVEVFDPVLSATECRVLEVLGCSVLSVNEQGERRATKPTLFYMPHCEAGLYNNLLRANWEVE ALNRMSLFGNSFRVYREYASLKNLVVVDSSHIIAVEGVTEEFGVSTVWEDYFAGFHDSSWHFFMPGGDEVLPLLDRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59560		SRR1	SENSITIVITY TO RED LIGHT REDUC...		Lus10024163 [exp]	0	1
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10021666 [exp]	1.0	0.8066
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10010336 [exp]	8.5	0.7880
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026919 [exp]	20.1	0.7929
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Lus10031908 [exp]	26.9	0.7728
AT1G25360			Pentatricopeptide repeat (PPR)...		Lus10028106 [exp]	29.2	0.7680
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Lus10007470 [exp]	38.0	0.7063
AT1G71090			Auxin efflux carrier family pr...		Lus10002280 [exp]	41.2	0.6553
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10014514 [exp]	42.7	0.7337
AT3G16780			Ribosomal protein L19e family ...		Lus10038418 [exp]	44.1	0.7584
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Lus10019360 [exp]	51.5	0.7470

Compare expression of checked genes

Lus10024163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.