Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13810 253 / 1e-83 Glutaredoxin family protein (.1) AT3G57070 197 / 3e-60 Glutaredoxin family protein (.1) AT2G41330 182 / 8e-55 Glutaredoxin family protein (.1) AT5G58530 151 / 3e-44 Glutaredoxin family protein (.1) AT5G39865 147 / 3e-41 Glutaredoxin family protein (.1) AT3G28850 133 / 5e-36 Glutaredoxin family protein (.1) AT5G06470 124 / 5e-34 Glutaredoxin family protein (.1) AT4G10630 126 / 7e-34 Glutaredoxin family protein (.1) AT1G32760 121 / 3e-32 Glutaredoxin family protein (.1) AT1G64500 121 / 6e-32 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039537 [exp] 504 / 0 AT5G13810 261 / 4e-87 Glutaredoxin family protein (.1) Lus10018025 [exp] 161 / 8e-47 AT3G57070 293 / 2e-96 Glutaredoxin family protein (.1) Lus10001669 [exp] 159 / 3e-46 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1) Lus10042021 [exp] 147 / 1e-41 AT3G57070 252 / 2e-80 Glutaredoxin family protein (.1) Lus10040949 [exp] 143 / 1e-41 AT5G58530 164 / 2e-50 Glutaredoxin family protein (.1) Lus10007517 [exp] 142 / 7e-41 AT5G58530 153 / 1e-45 Glutaredoxin family protein (.1) Lus10013597 [exp] 139 / 4e-40 AT5G06470 179 / 2e-56 Glutaredoxin family protein (.1) Lus10021255 [exp] 138 / 9e-40 AT5G06470 185 / 7e-59 Glutaredoxin family protein (.1) Lus10017029 [exp] 143 / 1e-39 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G198100 [exp] 328 / 2e-113 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.T125406 [exp] 328 / 2e-113 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.001G026600 [exp] 325 / 3e-112 AT5G13810 312 / 1e-107 Glutaredoxin family protein (.1) Potri.006G041800 [exp] 219 / 7e-69 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1) Potri.016G038600 [exp] 210 / 2e-65 AT3G57070 317 / 5e-105 Glutaredoxin family protein (.1) Potri.009G075600 [exp] 155 / 8e-46 AT5G58530 199 / 3e-63 Glutaredoxin family protein (.1) Potri.001G280400 [exp] 150 / 3e-44 AT5G58530 234 / 4e-77 Glutaredoxin family protein (.1) Potri.016G079400 [exp] 147 / 2e-41 AT5G03870 301 / 2e-99 Glutaredoxin family protein (.1) Potri.008G072200 [exp] 142 / 5e-41 AT5G58530 177 / 7e-55 Glutaredoxin family protein (.1) Potri.006G212700 [exp] 145 / 2e-40 AT5G03870 332 / 2e-111 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10024164 pacid=23141476 polypeptide=Lus10024164 locus=Lus10024164.g ID=Lus10024164.BGIv1.0 annot-version=v1.0 ATGGCGGAATTCGAGAAAAACGCCACCGCCACAAACAACAACAACATGGATTTATCTGTGAAAACGAGAGCTAGTCCGACTTCCTCCGCCACTGCATTTT TCCACCGATCTTTCACAATTCAGGCAGCCAGAGCCACCCCTAAGCCATACATCCAATCCCCATCCCGATTCACCAATTCCTTCGACTCCATGAAGGGCAA AGTCAGAAAAATCCGCAACATCTTCGAAGCATCCCGATCCCGCCCCAAATCCATCTCCGACGAATCATCATCGAAGCAGAAATCGCTAATGTCCACAACA TCATCATCATCGTCGTCGTCACAGCTGCCTCCTCCGGGGAAGTATCTGTCGATGAAATCAATGGCCCCCGACCACAGTCGGTACCACAGCCTATTCAAAA GCAGTTGGGTGGTGCGATTGGCAGGTACGGAGGACAGAATTGTGGTGTATTTCACAAGCTTGAGAGGTGTGAGGAGGACGTTTGAGGATTGCTATGCTGT TAGGATGATCTTTAGAGGGTTTAGGGTTTGGGTGGATGAGAGGGATATCTCGATGGATTCGGCTTACAAGCAGGAACTGCAGAGCGTGTTGGGGGTTGTG ACGCTGCCGCAAGTGTTCATAAGAGGGAGGCATGCAGGTGGAGCTGAGTTGATAAAGCAGATGTTCGAGACAGGGGAGTTGGCCAAAGTTCTTGATGGTT TCCCAAGAAGGGAGCCTGGTTTTGTTTGCCAAGGTTGTGGGGATGCCAGGTTTGTGCCTTGTTGCTTCTGTAGTGGCAGTAGGAAGATCTTCGACGAAGA CGAAGAGGTGCCCAAAAGGTGCTTGGAATGCAATGAGAATGGCTTGATGAGGTGCCAGGATTGCTGCTCGTAA
AA sequence Show only first row Show all	>Lus10024164 pacid=23141476 polypeptide=Lus10024164 locus=Lus10024164.g ID=Lus10024164.BGIv1.0 annot-version=v1.0 MAEFEKNATATNNNNMDLSVKTRASPTSSATAFFHRSFTIQAARATPKPYIQSPSRFTNSFDSMKGKVRKIRNIFEASRSRPKSISDESSSKQKSLMSTT SSSSSSSQLPPPGKYLSMKSMAPDHSRYHSLFKSSWVVRLAGTEDRIVVYFTSLRGVRRTFEDCYAVRMIFRGFRVWVDERDISMDSAYKQELQSVLGVV TLPQVFIRGRHAGGAELIKQMFETGELAKVLDGFPRREPGFVCQGCGDARFVPCCFCSGSRKIFDEDEEVPKRCLECNENGLMRCQDCCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13810			Glutaredoxin family protein (....		Lus10024164 [exp]	0	1
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034977 [exp]	1.0	0.9255
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020735 [exp]	2.4	0.9014
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008537 [exp]	2.4	0.9073
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10041272 [exp]	2.8	0.9034
AT3G56880			VQ motif-containing protein (....		Lus10015982 [exp]	3.5	0.9045
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10028157 [exp]	3.9	0.9015
AT3G01170			Ribosomal protein L34e superfa...		Lus10005234 [exp]	4.9	0.8776
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10041838 [exp]	5.3	0.8998
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022193 [exp]	5.5	0.8852
AT1G63290			Aldolase-type TIM barrel famil...		Lus10032052 [exp]	6.0	0.8950

Compare expression of checked genes

Lus10024164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.