Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07940 492 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) AT4G05330 348 / 3e-116 AGD13 ARF-GAP domain 13 (.1) AT4G21160 348 / 5e-116 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT1G73580 141 / 3e-39 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G66360 139 / 2e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70790 137 / 2e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G70800 134 / 2e-36 EHB1 ENHANCED BENDING 1, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G47710 129 / 7e-35 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G70810 127 / 5e-34 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G17980 126 / 9e-34 AtC2 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039538 [exp] 1036 / 0 AT3G07940 490 / 4e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10002760 [exp] 660 / 0 AT3G07940 480 / 2e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10016347 [exp] 628 / 0 AT3G07940 478 / 8e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10038539 [exp] 322 / 4e-106 AT4G21160 491 / 4e-176 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Lus10023265 [exp] 308 / 4e-100 AT4G21160 495 / 3e-177 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Lus10033585 [exp] 140 / 1e-38 AT3G17980 244 / 1e-83 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009684 [exp] 141 / 3e-38 AT3G17980 254 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038745 [exp] 138 / 5e-38 AT5G47710 241 / 1e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10009053 [exp] 139 / 2e-37 AT3G17980 255 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G198301 [exp] 537 / 0 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.T125706 [exp] 535 / 0 AT3G07940 503 / 8e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.001G372000 [exp] 349 / 9e-117 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.011G098500 [exp] 345 / 5e-115 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.001G026400 [exp] 242 / 6e-76 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.008G131500 [exp] 142 / 1e-39 AT3G17980 202 / 5e-67 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.012G047100 [exp] 141 / 4e-39 AT3G17980 251 / 2e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G089500 [exp] 137 / 1e-37 AT3G17980 245 / 4e-84 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G004600 [exp] 135 / 5e-37 AT5G47710 270 / 3e-94 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.017G125500 [exp] 133 / 3e-36 AT3G17980 249 / 6e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0154 [flax] [poplar] PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10024165 pacid=23141589 polypeptide=Lus10024165 locus=Lus10024165.g ID=Lus10024165.BGIv1.0 annot-version=v1.0 ATGTCTTCATCAGGGGACGATTCTGATGGCCGTGCTCCTTCGGCTGAAGCAGATGTGCATTCTGGCAGAAAATTGCAAAATGACCTACAATCTTCAACCA GTCTACACCAACAAATACCATCTGCTAGCTTAATGCAACCACCAGCTGGCCATCAACTTCCATCACCCCCATATGTCGAAAAGCAGCCACTGGATAGCTC AGAGACATCAGCTAGCCCACAATCATCATCATCGCCAACTAGTCAGCAACAGCCACCGGATGGCTTAGAGTCATTGGCTAGTCATGAACTACACCCAGAT AGCCTGGAATTGTCATCAGTTAGCCATACCCTTGAATCAGATATCCCACAACCGTCAACTAGCTCGGAAACTCTAACCACCCAGCAACCATCATTGAACA ACGAGCAACATCCATCAAATACCCCAGAACCAACTAGGCAAAAAAAACCGTCGGTTACTTTTCAACTGCCGCCTCGTACCCATGAGACATCAGCTGGTCA CGAACCATTACCAGCTGGTGGACAGTTGTCCACGGCTGCTCATCTTGAAATTCCACCAGCTAGCCAGCACCAACCAACTCCATACCCACAACCACAATCA GAACCACAGCCGCAACCGCCAACTAGTTCACAACTGCAGACTAGCCTTCATGATCTCTTACATTCAGAGGTACCAACCAAGACCAAAAAGGATCGCCGTA AAACTTCCGTTCCACAGAAAAGATTGGAGAAACTGCTCAGCCAATCATGCAACAAGCACTGTGCAGATTGTGGGTCTACAGATCCGAAATGGGTATCTAT AAGTCACGGAGTGTTCATATGTATTAAGTGTTCCGGAGTCCATAGAAGCCTCGGAGTACATATATCAAAGGTTTTATCAGTCAAGCTAGATGAATGGACA GATGATCAGGTCACTGCTTTCATGGAATTGGGTGGGAATATAATGGTAAACAAGAAATTGGAAGCTTTTATCCCAGAAGATTGTAAAAAGCCAAAATCAG ATGCTTCTATAGATGAGAGAGCCGAATATATTAGGAGAAAATACGAGATGCTAGAATTTACGGACTTCAATGAGCAAATGATAGGCACCAATAGATTGAA CTCCCATGGACATGGCTCTTCTGGGGACAAGACACAGTATGAGAAACAAACAACCAGACATCGTTTCGGGAGTGCATTGAGGAACAGCTGGGGGAAAAAA GATGCAGATCCGAAGCAACCCAAGAAAAGTTTGTCTTTGGCAGGAATGGTTGAATTTATTGGGTTAATTAAGGTAAACGTAGTAAAAGGAACCAATCTGG CAATCCGGGATATGGTAACAAGTGACCCTTATGTCATCCTTGGATTGGGTCATCAATCGGTAAAGACACGAGTGATCAAGAACAACCTCAACCCTGTGTG GAACGAAAGCCTGATGTTGTCAATCCCAGATCACATTCCTCCCCTTAAAGTGCTTGTGTACGACAAGGACACATTCTCAACGGACGATTTTATGGGAGAA GCCGAGATTGATATTCAACCTCTGGTATCAGCTGCAAGGGCATACGAGACATCATCAATAGATGAATCAACACAGCTAGGGAAATGGGTGGCAAGCAAAG ACAATACTCTGGTGAAAGATGGTATAATCTCCTTAATAGATGGGAAAGTGAAGCAAGAAATCAGTCTGAGGCTGCAGAATGTTGAGAGGGGAGTCCTTGA GATTGAACTTGAATGTGTCCCTCTTACTCAATAA
AA sequence Show only first row Show all	>Lus10024165 pacid=23141589 polypeptide=Lus10024165 locus=Lus10024165.g ID=Lus10024165.BGIv1.0 annot-version=v1.0 MSSSGDDSDGRAPSAEADVHSGRKLQNDLQSSTSLHQQIPSASLMQPPAGHQLPSPPYVEKQPLDSSETSASPQSSSSPTSQQQPPDGLESLASHELHPD SLELSSVSHTLESDIPQPSTSSETLTTQQPSLNNEQHPSNTPEPTRQKKPSVTFQLPPRTHETSAGHEPLPAGGQLSTAAHLEIPPASQHQPTPYPQPQS EPQPQPPTSSQLQTSLHDLLHSEVPTKTKKDRRKTSVPQKRLEKLLSQSCNKHCADCGSTDPKWVSISHGVFICIKCSGVHRSLGVHISKVLSVKLDEWT DDQVTAFMELGGNIMVNKKLEAFIPEDCKKPKSDASIDERAEYIRRKYEMLEFTDFNEQMIGTNRLNSHGHGSSGDKTQYEKQTTRHRFGSALRNSWGKK DADPKQPKKSLSLAGMVEFIGLIKVNVVKGTNLAIRDMVTSDPYVILGLGHQSVKTRVIKNNLNPVWNESLMLSIPDHIPPLKVLVYDKDTFSTDDFMGE AEIDIQPLVSAARAYETSSIDESTQLGKWVASKDNTLVKDGIISLIDGKVKQEISLRLQNVERGVLEIELECVPLTQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10024165 [exp]	0	1
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10040903 [exp]	2.2	0.8567
AT1G05170			Galactosyltransferase family p...		Lus10021538 [exp]	5.2	0.8358
AT1G69230		SP1L2	SPIRAL1-like2 (.1.2)		Lus10032297 [exp]	8.4	0.8158
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10030793 [exp]	9.7	0.8409
AT3G63340			Protein phosphatase 2C family ...		Lus10014699 [exp]	12.2	0.8322
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Lus10010513 [exp]	16.1	0.8266
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10014706 [exp]	24.4	0.8160
AT3G11090	AS2	LBD21	LOB domain-containing protein ...		Lus10028986 [exp]	27.2	0.7710
AT4G32140			EamA-like transporter family (...		Lus10026249 [exp]	27.7	0.8031
AT2G20100	bHLH		basic helix-loop-helix (bHLH) ...		Lus10023669 [exp]	27.7	0.8092

Compare expression of checked genes

Lus10024165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.