Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54470 730 / 0 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039539 [exp] 903 / 0 AT3G54470 776 / 0.0 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G026300 [exp] 801 / 0 AT3G54470 711 / 0.0 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (.1) Potri.T125906 [exp] 799 / 0 AT3G54470 685 / 0.0 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (.1) Potri.003G198501 [exp] 798 / 0 AT3G54470 686 / 0.0 uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00215 [flax] [poplar] OMPdecase Orotidine 5'-phosphate decarboxylase / HUMPS family CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10024166 pacid=23141544 polypeptide=Lus10024166 locus=Lus10024166.g ID=Lus10024166.BGIv1.0 annot-version=v1.0 ATGTCTTCATCTTCATCGATGGAATCTCTTATCCTCAAGCTCCACGAGATCTCCGCTGTCAAATTCGGCAACTTCAAGCTCAAATCCGGTATCTTCTCCC CAATCTACATTGACCTCCGCCTCATCATCTCTTACCCATCCCTCCTCGCCCAAATCTCCCAGACCTTGATTTCCTCCGTCAATGCCGCCTCCGTTTCATT AGACCTCGTCTGCGGCGTCCCATACACCGCCCTCCCAATCGCCACTTCCGTCTCCCTTTCCAACGACATCCCTATGGTCATGCGCCGTAAGGAAGTCAAA GACTACGGCACTGCCAAAGCCATCGAGGGACATTTCAAACCCGGCCAGACTTGCCTGATTATCGAGGATCTTGTCACCAGCGGCACCTCGGTGCTCGAAA CGGCGGCACCGCTTCGTTCGGTGGGGTTGAAGGTGACTGACGCGGTTGTTTTGATCGATAGGGAGCAAGGTGGGCGGGAGAATCTGGAGGCCAACGGGAT TAGATTACACGCCATGATCAAGTTGACTGATATGGTTAGGGTTCTGAGGGAGAAGGGCAAGTTGGGGGAAGATATGGAGAAGGAGGTGTTGAAGTTCTTA GAGGAGAACAAGAAAGTGGCTGCCGTGCCGAATGCGGAGAAGAAGGTTAGGGTGAAAGGTTTGAGTTTTGAGGATAGGGCGAAGTTGGCCAAGAATCCAA CTGGTAAGAAGTTGTTTGAAGTGATGGTGAAGAAGGAGACTAATTTGTGTTTGGCTGCTGATGTTGGGACTGCCAAAGAGTTGCTTGAGCTTGCAGAGAA AGTCGGGCCAGAGATATGCATGTTGAAGACACACGTTGACATATTGCCTGACTTCACTCCTGATTTTGGGTCGAAGCTAAGAGCGATTGCAGACAAATAC AATTTCATGATATTTGAAGATCGTAAGTTTGCTGACATTGGCAACACAGTGACAATGCAATATGAAGGAGGCATATTCCAGATATTGGAATGGGCTGATA TAGTTAATTGTCACATTATTTCTGGTCCTGGAATTGTGGACGGGCTGAAATTAAAGGGTTTGCCCAAAGGCAGAGGTCTGTTATTGCTTGCAGAAATGAG CTCAGCTGGCAACTTTGCGACAGGAAGCTACACAGCAGCAGCAGTCAAAATAGCCGAAGAACATTCTGATTTTGTATTTGGCTTCATTTCTGTTAATCCT GCGTCTTGGCCTGGAGCCCCAGTAAATCCAGCATTTATTCAGGCAACCCCTGGAGTCCAAATGGTAAAAGGTGGCGATGCTCTTGGGCAGCAGTATAACA CCCCTTACTCGGTCATATATGATCGAGGCAGTGACATCATTATCGTAGGCCGTGGGATTGTCAAAGCAGCAAATCCATCAGAAGCAGCTCGTGAATATCG CCTTCAAGGTTGGGATGCATACCTGGCTAAATGCACATGA
AA sequence Show only first row Show all	>Lus10024166 pacid=23141544 polypeptide=Lus10024166 locus=Lus10024166.g ID=Lus10024166.BGIv1.0 annot-version=v1.0 MSSSSSMESLILKLHEISAVKFGNFKLKSGIFSPIYIDLRLIISYPSLLAQISQTLISSVNAASVSLDLVCGVPYTALPIATSVSLSNDIPMVMRRKEVK DYGTAKAIEGHFKPGQTCLIIEDLVTSGTSVLETAAPLRSVGLKVTDAVVLIDREQGGRENLEANGIRLHAMIKLTDMVRVLREKGKLGEDMEKEVLKFL EENKKVAAVPNAEKKVRVKGLSFEDRAKLAKNPTGKKLFEVMVKKETNLCLAADVGTAKELLELAEKVGPEICMLKTHVDILPDFTPDFGSKLRAIADKY NFMIFEDRKFADIGNTVTMQYEGGIFQILEWADIVNCHIISGPGIVDGLKLKGLPKGRGLLLLAEMSSAGNFATGSYTAAAVKIAEEHSDFVFGFISVNP ASWPGAPVNPAFIQATPGVQMVKGGDALGQQYNTPYSVIYDRGSDIIIVGRGIVKAANPSEAAREYRLQGWDAYLAKCT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54470			uridine 5'-monophosphate synth...		Lus10024166 [exp]	0	1
AT3G54470			uridine 5'-monophosphate synth...		Lus10039539 [exp]	2.6	0.9726
AT2G28600			P-loop containing nucleoside t...		Lus10043421 [exp]	3.2	0.9701
AT4G21520			Transducin/WD40 repeat-like su...		Lus10011253 [exp]	3.9	0.9506
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10004628 [exp]	5.5	0.9643
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	7.2	0.9649
AT1G24310			unknown protein		Lus10015795 [exp]	8.1	0.9519
AT1G74050			Ribosomal protein L6 family pr...		Lus10039083 [exp]	8.7	0.9650
AT5G44500			Small nuclear ribonucleoprotei...		Lus10013108 [exp]	8.8	0.9628
AT5G44500			Small nuclear ribonucleoprotei...		Lus10003498 [exp]	10.6	0.9570
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10003935 [exp]	12.0	0.9540

Compare expression of checked genes

Lus10024166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.