Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15900 375 / 7e-128 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT5G15890 338 / 3e-112 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT3G28150 270 / 6e-87 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT4G23790 270 / 6e-87 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT1G01430 268 / 1e-85 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT1G70230 262 / 8e-84 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT4G11090 262 / 1e-83 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT4G01080 259 / 3e-82 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1) AT3G02440 253 / 5e-81 TBL20 TRICHOME BIREFRINGENCE-LIKE 20 (.1) AT5G51640 251 / 1e-78 TBL17, YLS7 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034087 [exp] 402 / 4e-138 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1) Lus10003061 [exp] 399 / 3e-137 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10029454 [exp] 281 / 5e-91 AT1G01430 488 / 2e-171 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10039438 [exp] 281 / 6e-91 AT3G28150 431 / 8e-150 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Lus10005952 [exp] 278 / 1e-90 AT1G01430 464 / 5e-163 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10039476 [exp] 278 / 3e-90 AT3G28150 428 / 1e-148 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Lus10033950 [exp] 273 / 2e-87 AT4G11090 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10032367 [exp] 273 / 3e-87 AT4G11090 521 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10010704 [exp] 263 / 2e-83 AT1G70230 459 / 2e-160 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G110200 [exp] 494 / 1e-174 AT5G15900 419 / 2e-144 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105500 [exp] 492 / 8e-174 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105700 [exp] 428 / 3e-148 AT5G15900 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105600 [exp] 417 / 1e-144 AT5G15900 411 / 5e-142 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.017G073700 [exp] 301 / 4e-99 AT3G28150 442 / 3e-154 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Potri.001G093800 [exp] 294 / 1e-95 AT4G11090 516 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.003G137800 [exp] 291 / 1e-94 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.002G168400 [exp] 288 / 1e-93 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.014G095800 [exp] 283 / 8e-92 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.011G144100 [exp] 266 / 1e-85 AT3G28150 415 / 9e-144 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10024167 pacid=23141599 polypeptide=Lus10024167 locus=Lus10024167.g ID=Lus10024167.BGIv1.0 annot-version=v1.0 ATGAACCTTCATTTACCGAGCTACGACACTGCCAAGAGGCTACTTCTGACGCCTATCATCATCGTCGCCCTAACCCTGATCCCTCTGAGTATAGTATTCA AGAGTTCAGCCTCACAACTACTGTCTTCTGTCAAGAGTTCGAAAGAGAAAGAATGTAATATTTTCAGGGGAGGCTGGGTTCCTTATCCTAAAGGGCCTAA CTACACCGGTGAACAATGCCCCTTCATAGTTCCACATAACAACTGCATAAGATCTGGAAGGTTAGATACACAGTTCATGAACTGGAGATGGAGACCCAGG GGTTGCGAGCTACCTTTGTTCGACGCGGTGCAGTTCCTAGAGCTTGTTCGAGGGAAGTCCATGGCCTTCATCGGAGACTCCGTTGGCTGGAATCAAGCAC AGTCACTGCTCTGTCTCTTACAGGCCGTGGCATATCCTGAGAATAGGTCTCATAGCAATGAAACAACCAGGGAATACTCCACAAGATGGTTCTACCGGGA CCACGAATTCACACTTGCATCATTTTGGTCTCCCTTCTTGGTCAAAGCACAAGACTCGGACCCGAACGGGCCTTCCCTCGACAGCAGCATGAACCTTTAC TTAGACCAACCTGATGACGAATGGGCCACCAAGATTCAAGATTTCGATTTTGTGATCATCTCTGCTGGCCACTGGTTCTTTAGACCACTGATGCACTATA TTGACGGCCAGTTGGCCAGTTGCCACAAGTGTAGAAACAAGAAGGTTACTCCTGTAACAACTTACTACGGATACAGTATGGCGTTTCGAACTACCTTCAG CTACCTTCAAAGCCTGGAAAATTATAAGGGCATCACATTCATGAGGACATTTTCGCCATCCCACTTTGAGAATGGGGAATGGAACTCCGGTGGAGATTGT TTGAAGACGAGACCCTCGCGAAGTGGAGAGGCAAAGCTAGAAGGGTACACTTTAGAGTTGTACAAGGCTCAAATTAGGGAGCTGCGCAAGGCAAAGAGAG AAGGGAAGAGCAAAGGTTTGAAATTTGAGGTGCTAGCTGCTACTGAAGCAATGGTGATGAGGCCAGATGGGCACCCAAGTCGGTTTGGGTACACATCAAA GGAAAAAAATGTTACAGTGAATGATTGTGTTCATTGGTGCTTGCCAGGGCCTATTGACACATGGAACGAGTTCTTGCTCTACATCATGAACAAGGAAACT GTTAAATCTTTGGTACAATAA
AA sequence Show only first row Show all	>Lus10024167 pacid=23141599 polypeptide=Lus10024167 locus=Lus10024167.g ID=Lus10024167.BGIv1.0 annot-version=v1.0 MNLHLPSYDTAKRLLLTPIIIVALTLIPLSIVFKSSASQLLSSVKSSKEKECNIFRGGWVPYPKGPNYTGEQCPFIVPHNNCIRSGRLDTQFMNWRWRPR GCELPLFDAVQFLELVRGKSMAFIGDSVGWNQAQSLLCLLQAVAYPENRSHSNETTREYSTRWFYRDHEFTLASFWSPFLVKAQDSDPNGPSLDSSMNLY LDQPDDEWATKIQDFDFVIISAGHWFFRPLMHYIDGQLASCHKCRNKKVTPVTTYYGYSMAFRTTFSYLQSLENYKGITFMRTFSPSHFENGEWNSGGDC LKTRPSRSGEAKLEGYTLELYKAQIRELRKAKREGKSKGLKFEVLAATEAMVMRPDGHPSRFGYTSKEKNVTVNDCVHWCLPGPIDTWNEFLLYIMNKET VKSLVQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10024167 [exp]	0	1
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10038014 [exp]	3.3	0.9810
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10026865 [exp]	3.5	0.9755
AT1G70420			Protein of unknown function (D...		Lus10002380 [exp]	3.7	0.9715
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012143 [exp]	4.7	0.9795
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Lus10034267 [exp]	5.0	0.9663
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10013611 [exp]	6.0	0.9737
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10029214 [exp]	6.9	0.9787
AT2G17940			Plant protein of unknown funct...		Lus10028461 [exp]	6.9	0.9780
AT3G16070			unknown protein		Lus10034910 [exp]	7.5	0.9639
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10013549 [exp]	8.4	0.9745

Compare expression of checked genes

Lus10024167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.