Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54480 367 / 5e-129 SKP5, SKIP5 SKP1/ASK-interacting protein 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039556 [exp] 464 / 2e-167 AT3G54480 371 / 8e-131 SKP1/ASK-interacting protein 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G025601 [exp] 387 / 2e-137 AT3G54480 372 / 2e-131 SKP1/ASK-interacting protein 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10024168 pacid=23141538 polypeptide=Lus10024168 locus=Lus10024168.g ID=Lus10024168.BGIv1.0 annot-version=v1.0 ATGGGTGTGGCGGCAGAGGATTGCAAGAAGCAAGTTTGGAAGAAGTCGAGGAAGAAGTCTATAGCTGCTTCTCCTTCTTCTTCTGGCCCTCGCCTTTCCC CAATTAGCAGCCTCGATGATGGCTGCCTTATGCACATCTTCAGCTTCTTATCTCCTATTCCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCG CTTCTTGGCGTGTCATCCTCGCCTATGGCTCCGAGTAGACCGTACTGTCAAAGATCTTTCAGAACCTGGAGTCTTCCCAAATGTCGAAACAGCTGTTTCT GCCGCTAGACCTGGAGACACCATTCTAATTGCAGCAGGCGGGAGTCATTTTGCCTCTAACATTCTGATGAATAAACCACTCTGCCTGGTTGGTGGAGGAG ATATTCCTGACGAAACGACACTTTTCTGCTCTCGAGGTTCGGACAGTGCACTAGAGTTCCTGTCATCTTGCAAGTTAATGAACCTAACTGTGAAAACGGA GCTGGGTTGTTGCTTGCTTCACAAAAGTGGGAGGCTGATGATAGATGGCTGCATTCTTCAGTGCGAATCTAACCCTCTGGATTATCTCTCATGTCCTATT ATAAGCACAGCTGGTGTATTTGAGGTTCGGTCTTCAACTGCCAAGAAGGGCAGCAATGGAGTCTCTGTTTCTCAAACACGAATCGAAGGAGGTGCTAAGG CTGTACTGGCAAATGGAGGCCTGACTTTGCAGCGCGTTCGGGTAATTTATGCTCGAGCTTGTGTTTACTTCTGGTTCGACGTAGACCACCAATGA
AA sequence Show only first row Show all	>Lus10024168 pacid=23141538 polypeptide=Lus10024168 locus=Lus10024168.g ID=Lus10024168.BGIv1.0 annot-version=v1.0 MGVAAEDCKKQVWKKSRKKSIAASPSSSGPRLSPISSLDDGCLMHIFSFLSPIPDRYNTALVCHRWRFLACHPRLWLRVDRTVKDLSEPGVFPNVETAVS AARPGDTILIAAGGSHFASNILMNKPLCLVGGGDIPDETTLFCSRGSDSALEFLSSCKLMNLTVKTELGCCLLHKSGRLMIDGCILQCESNPLDYLSCPI ISTAGVFEVRSSTAKKGSNGVSVSQTRIEGGAKAVLANGGLTLQRVRVIYARACVYFWFDVDHQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10024168 [exp]	0	1
AT5G53220			unknown protein		Lus10001067 [exp]	2.2	0.9443
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	2.6	0.9519
AT1G05410			Protein of unknown function (D...		Lus10041201 [exp]	3.2	0.9475
AT5G43920			transducin family protein / WD...		Lus10011916 [exp]	3.9	0.9379
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10022018 [exp]	4.2	0.9402
					Lus10034398 [exp]	4.9	0.9470
AT4G23895			Pleckstrin homology (PH) domai...		Lus10023081 [exp]	4.9	0.9314
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	6.2	0.9470
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10008197 [exp]	6.2	0.9389
AT5G01260			Carbohydrate-binding-like fold...		Lus10002495 [exp]	6.9	0.9392

Compare expression of checked genes

Lus10024168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.