Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54490 219 / 7e-72 RPB5E "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) AT3G57080 210 / 2e-68 RPB5B, NRPE5 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) AT2G41340 183 / 6e-58 RPB5D "RNA polymerase II fifth largest subunit, D", RNA polymerase II fifth largest subunit, D (.1) AT3G22320 101 / 3e-26 RPB5A, NRPD5, NRPB5, ATRPABC24.3 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) AT5G57980 74 / 5e-16 RPB5C "RNA polymerase II fifth largest subunit, C", RNA polymerase II fifth largest subunit, C (.1) AT3G16680 40 / 0.0001 DNA binding;DNA-directed RNA polymerases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039554 [exp] 373 / 4e-132 AT3G54490 184 / 6e-58 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Lus10018022 [exp] 196 / 1e-62 AT3G57080 280 / 6e-96 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Lus10042019 [exp] 165 / 1e-50 AT3G57080 239 / 4e-80 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Lus10013639 [exp] 109 / 2e-29 AT3G22320 342 / 3e-121 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Lus10001335 [exp] 109 / 2e-29 AT3G22320 342 / 3e-121 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G025500 [exp] 261 / 1e-88 AT3G54490 249 / 1e-83 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Potri.016G038500 [exp] 205 / 2e-66 AT3G57080 286 / 1e-98 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Potri.T127006 [exp] 115 / 8e-33 AT3G54490 92 / 5e-24 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Potri.003G200450 [exp] 112 / 9e-32 AT3G54490 92 / 4e-24 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Potri.006G161600 [exp] 101 / 4e-26 AT3G22320 365 / 2e-130 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Potri.001G179300 [exp] 86 / 2e-21 AT3G54490 92 / 6e-24 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01191 [flax] [poplar] RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain CL0236 [flax] [poplar] PDDEXK PF03871 [flax] [poplar] RNA_pol_Rpb5_N RNA polymerase Rpb5, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10024169 pacid=23141565 polypeptide=Lus10024169 locus=Lus10024169.g ID=Lus10024169.BGIv1.0 annot-version=v1.0 ATGGCGAGCAGCTCGAACAATGCTGTTGACGGCGGTGTAGGACTCACCGCAGACGGCGGCGGAGGTAATGGTCGGCAGTGTTTAACGGAGTTTACAGAGC CGGGGAGCGTGGAGAGCCTCAGGTACTACCTCTGCCGTCGTACGGTCTTTGAAATGTTGAACGACCGAGCTTACGAAGTTTCCGACGCCGAGCTGACTCG TACGCTCGCTGATTTCCGTACCGAGTTCGGCGACAAACCTGAGGTGGTACGCCTCCACTTCACCGTGTCTCTCCGCTCTGATACTCGCAAGAAGGTTCTT GTTCTATTCATGGGGGCCAATGAGTTGAAAGTTCAGGGGGTAAGAAATGTCTACAAACAGATTCTAGGAGAAGGCTTGTCACTACAAGGGCTGATTATGA TCTTGGAAGCCAAGGCTTCCAGTTATACTAAGAAGGCGCTTGAGACATTCCCATTCAAGGTGGAAGTCTTTCAAATTACTGACTTGATCGTGAATATAAC CAAGCATGTCCTGCAGCCAACGTATGAACTACAGACAACTCGAGAGAAGCAATTGCTACTGAACAAGTACAAAGTAGAAGACAAACAGCTCCCTAGCATG CAACAAAATGATGTCATGGTGAAATACTACGGAATGGAGAAGGGGCAGGTGGTGAAAATTGGTTACGAAGGTGGGCTAATTGATTCACTGACTACTTACC GATGCGTGGTTTGA
AA sequence Show only first row Show all	>Lus10024169 pacid=23141565 polypeptide=Lus10024169 locus=Lus10024169.g ID=Lus10024169.BGIv1.0 annot-version=v1.0 MASSSNNAVDGGVGLTADGGGGNGRQCLTEFTEPGSVESLRYYLCRRTVFEMLNDRAYEVSDAELTRTLADFRTEFGDKPEVVRLHFTVSLRSDTRKKVL VLFMGANELKVQGVRNVYKQILGEGLSLQGLIMILEAKASSYTKKALETFPFKVEVFQITDLIVNITKHVLQPTYELQTTREKQLLLNKYKVEDKQLPSM QQNDVMVKYYGMEKGQVVKIGYEGGLIDSLTTYRCVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54490		RPB5E	"RNA polymerase II fifth large...		Lus10024169 [exp]	0	1
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10005615 [exp]	7.6	0.8710
AT2G44040			Dihydrodipicolinate reductase,...		Lus10024047 [exp]	8.5	0.8513
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10005883 [exp]	12.1	0.8715
					Lus10000588 [exp]	14.5	0.7696
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Lus10019439 [exp]	19.3	0.8702
AT1G26880			Ribosomal protein L34e superfa...		Lus10030477 [exp]	19.4	0.8701
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10021907 [exp]	20.5	0.8694
AT5G40080			Mitochondrial ribosomal protei...		Lus10011032 [exp]	22.4	0.8657
AT2G25100			Polynucleotidyl transferase, r...		Lus10028856 [exp]	23.5	0.8572
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	25.7	0.8670

Compare expression of checked genes

Lus10024169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.