Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54500 258 / 2e-76 unknown protein AT5G64170 76 / 3e-14 dentin sialophosphoprotein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039553 [exp] 1302 / 0 AT3G54500 316 / 3e-98 unknown protein Lus10015846 [exp] 86 / 4e-17 AT5G64170 225 / 8e-66 dentin sialophosphoprotein-related (.1.2) Lus10009319 [exp] 86 / 7e-17 AT1G01860 417 / 4e-137 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Lus10005384 [exp] 48 / 2e-05 AT3G12320 79 / 1e-16 unknown protein Lus10024129 [exp] 47 / 4e-05 AT3G12320 80 / 8e-17 unknown protein Lus10008671 [exp] 46 / 8e-05 AT3G12320 65 / 1e-11 unknown protein Lus10026150 [exp] 44 / 0.0002 AT5G06980 66 / 4e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T127206 [exp] 517 / 2e-175 AT3G54500 355 / 2e-113 unknown protein Potri.001G025100 [exp] 452 / 9e-151 AT3G54500 325 / 4e-102 unknown protein Potri.003G200600 [exp] 427 / 1e-141 AT3G54500 298 / 3e-93 unknown protein Potri.T126406 [exp] 275 / 2e-85 AT3G54500 191 / 6e-55 unknown protein Potri.T126906 [exp] 269 / 1e-81 AT3G54500 156 / 4e-41 unknown protein Potri.T126606 [exp] 232 / 1e-70 AT3G54500 191 / 2e-56 unknown protein Potri.003G200300 [exp] 110 / 1e-27 AT3G54500 108 / 8e-28 unknown protein Potri.001G205800 [exp] 77 / 2e-14 AT5G64170 334 / 6e-106 dentin sialophosphoprotein-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024170 pacid=23141481 polypeptide=Lus10024170 locus=Lus10024170.g ID=Lus10024170.BGIv1.0 annot-version=v1.0 ATGTTTGATTGGAACGACGAAGAGCTTACAAATATAATATGGGATGAGGCTGAGGACCATATTGTGCCTTATCCAGTGGGAAGTGAAGCTTATAGCAAGA ACAAGGATTGGAATCATGAAGCAAGTAGCAGTAAGCTAGAGGAGCAGAAGAAGGCACCTTCAACCAAAGATGATATCAGTGAGAGGAAGCAGGAGAGCGC TTCAAACGTCAAGAACAATGAAGGAACTTCTTGCACAGGATATCAGATGGACCCTTGGCCTGACATATCATTGCCTAAAGTTGCCAAAAAAGATCAGGAT TGCTTGGAAACTTCAGTATCTAGTTTAAGTGAGATTACCATATTTGAATCTTTTGGAGGTGGCGGAGAGACTGCTAAGCCTGGTAAGGACCTTCAAACTT TCCAAACTCTTGATGAGAGTAAGGAACAAGCTAACTTTGTTGACTATGGTTGGGCTAATATTGGAAGTTTTGATGATCTCGATCGAATTTTCAGCAACGA TGATTCAATATTTGGGAATGTAAATCTTGATAATGCTGATGAGCTGTGGTCTTCCTCTAAAGAAGTAGCAAGTAACCCGGAAAATTCGTTCCCCCTGTCT ACAGGGTCACCTAGTTTAAAACTAGGGATCCCAGCGAGTACGGCTGATCACTATGGACTCAAAACAGAATATGCACAAGAAGAACAGACTCTCATTTCTA GTAGAGTCGAAGTAAATGATCACACATCCACTCTGCAGAATGCACATGCCATGATAAGCCCTGTAGAATATGGTGGGGATGGAAGTAAGGTCACTATTAA TGAGGCAGATTCAAATGCACAAGGAAGGAATTCATCAGTAAACTCACAGATTACTGTAGAAGATGCTGCACTTCAAAGTAGATTCACTAATAAGGTATGT AAGCAAAGCAAAAAGTCAAAAGGTAGGAAAAAGATGGTGGGGAAAAATGACATGATGATATACCCTGCTGCATATCATAACTGGAATACATCAGGAAATC CTTCTGGTCGGTTAAAGAATCAACTTATAGCACCTTCCTCTTCAATTCTCAGACAACAAAGACAGCCCAGAGGATCTGAATCCTTACAGTACCATCAAGT CAACAGCCCATTTGGAGCCTCTTTCGGATATGCAAATGTTAATCTCACAAACCCCTGTTCATCCATTCCTGTGCCGGTTCAGTGTGCAGAATTCAAGCAT CAGTCTTTACTTCCTGGCCATGATGCATTGTTGGGTAATCAGGCCTCTGTTAACACACTCTCTAGTACTGCAGTGAAAGGTAAGAGCATGACACCTCAAG AAAAGATTGAAAAGTTAAGGAGGCAGCAGCAAATGCGGGCTATGCTTGCCATCCAAAAGCAGCAACAGCAGTTTGGTCATCAAACTCCCTCCAAAGATCA TTCCTTTAACAAAAGAGCGTGGAAAGAAACTCAAGTTCAGCACAATAGTGGAGCCGATGCAGGAGTTGAGGACCCAAGTACACTTTTGGATTTCGAACAA GATGATTCTAGTACAGGGTCTCTCCCTGCGAAAGAATGTGGGATGGAGGAGTCTGTACTTTTCCAGCTTCAAGATATTATTGCAAAGTTGGATGTCAGAA TTCGACTTTGCATACGTGATAGCTTGCTTCGGCTAGCTCAAAGTGCAATGCATAGGAACTCTATTTCCAATATTACCAGTACAAACTTCAGTTGCAAAGA TAAGAAACCGCCTAGTATGCAGAAAGCTAGTTGTCCTGACAGGAACCCGGTGATACTTGAAGAAGAAACAAAGACGAACCCAATTGATCGGATAGTGGCT CATTTACTCTTTCATAGACCCCAGGAACCACCTGGGAAACATCCTGGAACTCCCGAATCACCAGCTTCTTCCAAGTACACCCTGGAATGTGAGGGTGAAG GTTCATCAAAGCACAAAGCAAGGTTTCTTTCGGAGACAGAAATGGATAAACAGAATGTTACGAACACAGTCTCTGGAATTTCATGCCTATCATCTGATCC CATGGCTACTGGTCAGCAGAGTCAAAATGTGCTTTCCTCTGAAACATCAGAGAATGCATCAAACTGTAGACCAGCAGATGAGTTGGCTCAGGGGGGCGAA ACCTCTATATGA
AA sequence Show only first row Show all	>Lus10024170 pacid=23141481 polypeptide=Lus10024170 locus=Lus10024170.g ID=Lus10024170.BGIv1.0 annot-version=v1.0 MFDWNDEELTNIIWDEAEDHIVPYPVGSEAYSKNKDWNHEASSSKLEEQKKAPSTKDDISERKQESASNVKNNEGTSCTGYQMDPWPDISLPKVAKKDQD CLETSVSSLSEITIFESFGGGGETAKPGKDLQTFQTLDESKEQANFVDYGWANIGSFDDLDRIFSNDDSIFGNVNLDNADELWSSSKEVASNPENSFPLS TGSPSLKLGIPASTADHYGLKTEYAQEEQTLISSRVEVNDHTSTLQNAHAMISPVEYGGDGSKVTINEADSNAQGRNSSVNSQITVEDAALQSRFTNKVC KQSKKSKGRKKMVGKNDMMIYPAAYHNWNTSGNPSGRLKNQLIAPSSSILRQQRQPRGSESLQYHQVNSPFGASFGYANVNLTNPCSSIPVPVQCAEFKH QSLLPGHDALLGNQASVNTLSSTAVKGKSMTPQEKIEKLRRQQQMRAMLAIQKQQQQFGHQTPSKDHSFNKRAWKETQVQHNSGADAGVEDPSTLLDFEQ DDSSTGSLPAKECGMEESVLFQLQDIIAKLDVRIRLCIRDSLLRLAQSAMHRNSISNITSTNFSCKDKKPPSMQKASCPDRNPVILEEETKTNPIDRIVA HLLFHRPQEPPGKHPGTPESPASSKYTLECEGEGSSKHKARFLSETEMDKQNVTNTVSGISCLSSDPMATGQQSQNVLSSETSENASNCRPADELAQGGE TSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54500			unknown protein		Lus10024170 [exp]	0	1
AT3G54500			unknown protein		Lus10039553 [exp]	1.0	0.9129
AT4G38960	CO		B-box type zinc finger family ...		Lus10031087 [exp]	1.4	0.8700
AT3G12320			unknown protein		Lus10024129 [exp]	3.5	0.8269
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030183 [exp]	3.9	0.8668
AT5G23850			Arabidopsis thaliana protein o...		Lus10039228 [exp]	4.9	0.6642
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Lus10019902 [exp]	5.3	0.8177
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030184 [exp]	5.5	0.8222
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10005134 [exp]	5.5	0.8243
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Lus10037636 [exp]	6.0	0.7846
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10009319 [exp]	6.0	0.8120

Compare expression of checked genes

Lus10024170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.