Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38750 309 / 8e-105 ANNAT4 annexin 4 (.1) AT1G35720 174 / 5e-52 ATOXY5, ANNAT1 annexin 1 (.1) AT5G10230 164 / 3e-48 ANN7, ANNAT7 annexin 7 (.1) AT5G65020 159 / 3e-46 ANNAT2 annexin 2 (.1.2) AT5G10220 150 / 4e-43 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT5G12380 150 / 7e-43 ANNAT8 annexin 8 (.1) AT2G38760 133 / 2e-36 ANN3, ANNAT3 annexin 3 (.1) AT1G68090 113 / 5e-29 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039551 [exp] 555 / 0 AT2G38750 311 / 7e-106 annexin 4 (.1) Lus10008227 [exp] 172 / 3e-51 AT1G35720 476 / 9e-171 annexin 1 (.1) Lus10003611 [exp] 170 / 1e-50 AT1G35720 476 / 1e-170 annexin 1 (.1) Lus10019780 [exp] 168 / 5e-50 AT5G12380 372 / 1e-129 annexin 8 (.1) Lus10041140 [exp] 167 / 3e-49 AT1G35720 414 / 2e-146 annexin 1 (.1) Lus10036470 [exp] 165 / 1e-48 AT1G35720 406 / 3e-143 annexin 1 (.1) Lus10024054 [exp] 155 / 6e-45 AT5G65020 400 / 6e-141 annexin 2 (.1.2) Lus10041696 [exp] 153 / 5e-44 AT5G65020 395 / 2e-138 annexin 2 (.1.2) Lus10024172 [exp] 150 / 9e-43 AT2G38760 349 / 1e-120 annexin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024900 [exp] 409 / 3e-144 AT2G38750 371 / 2e-129 annexin 4 (.1) Potri.007G092500 [exp] 184 / 7e-56 AT5G65020 488 / 2e-175 annexin 2 (.1.2) Potri.002G095600 [exp] 180 / 2e-54 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.005G075900 [exp] 176 / 5e-53 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.003G200700 [exp] 176 / 9e-53 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.001G277500 [exp] 157 / 1e-45 AT5G12380 442 / 3e-157 annexin 8 (.1) Potri.001G024800 [exp] 141 / 2e-39 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.008G139500 [exp] 105 / 5e-26 AT1G68090 363 / 4e-126 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.015G031800 [exp] 97 / 7e-23 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.012G041900 [exp] 93 / 2e-21 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [flax] [poplar] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Lus10024171 pacid=23141460 polypeptide=Lus10024171 locus=Lus10024171.g ID=Lus10024171.BGIv1.0 annot-version=v1.0 ATGGCTGATCATATGCAACTGGAAGCTCTCTCCAAGTCTTTCTCAGGGCTGGGTGTTGATGAAAGATCACTGATATCAATCCTGGCAAAATCACCTCCCG AGCACAGGAAATCCTTCAGGAAAGGAGCTCCCCAATTGTTCCAAGAGGATGAGCGTTCTTTCGAGCGCTGGATTGACGCCCGAATCTCTCTTCTCAAGGC CGAATTCCTTCGATTCAATGAAGCAGTGGTGCTGTGGACAATGCATCCATGGGAAAGGGATGCTCGTTTGCTGAAGGAAGCAGTGAACGAAGGTCCCAAC TCATTTGGGGTGATCGTAGAGATTGCTTGCACCAGATCTTCTGAGCAGCTGTTGGGAGCTAGAAAAGCTTACCATTCTCTCTATGATCGCTCCGTCGAAG AAGATGTTGTCACCCACTTCCATGGCCGTCCCGAGCGCAAGCTGCTGGTGGGATTAGTGAGTGCTTACAGATATGAAGGGACAAAGGTTAACTCAGTCAC TGTTAATTCAGAAACTAAGGTGCTGTCAAATGCTATAAGCAATGAAGCTAACAGCAACAAGAACCCAGTTGAGGATGAAGAGGTGGTAAGAATACTGACA ACCAGAAGCAAGCCCCATATCCACTCCATTTATGAACACTACAAGGAAATTGCCGGCAAAAGTATCCGCGAGGATCTTGAAGCTGCTGCATTGATCTTGG AACAAACAGTTGAATGTTTGTGCACACCTCATGTTGTGCATGAAGCTATGAAAAAGGAGGCAGATGAGAAGACGAAGAAAGGGTTGACTCGAGTGATCGT GACTCGTGCTGACACGGACATGAAGGAGACCGAGATAGCATACAATAACTTGTTTGGAGCTACTCTGTCGGAGAGGGTGGAAGAAGCAACAAACGGGAAC TATAAGGAAATGTTGCTTACCTTGCTAACAACAGAGCATACTAGATGA
AA sequence Show only first row Show all	>Lus10024171 pacid=23141460 polypeptide=Lus10024171 locus=Lus10024171.g ID=Lus10024171.BGIv1.0 annot-version=v1.0 MADHMQLEALSKSFSGLGVDERSLISILAKSPPEHRKSFRKGAPQLFQEDERSFERWIDARISLLKAEFLRFNEAVVLWTMHPWERDARLLKEAVNEGPN SFGVIVEIACTRSSEQLLGARKAYHSLYDRSVEEDVVTHFHGRPERKLLVGLVSAYRYEGTKVNSVTVNSETKVLSNAISNEANSNKNPVEDEEVVRILT TRSKPHIHSIYEHYKEIAGKSIREDLEAAALILEQTVECLCTPHVVHEAMKKEADEKTKKGLTRVIVTRADTDMKETEIAYNNLFGATLSERVEEATNGN YKEMLLTLLTTEHTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10024171 [exp]	0	1
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025197 [exp]	3.0	0.9479
					Lus10022042 [exp]	3.5	0.9197
AT2G37240			Thioredoxin superfamily protei...		Lus10029111 [exp]	4.2	0.9244
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027395 [exp]	4.9	0.9399
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Lus10014120 [exp]	5.8	0.9116
					Lus10030905 [exp]	5.9	0.9298
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025198 [exp]	6.0	0.9340
					Lus10020564 [exp]	6.3	0.9408
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031677 [exp]	7.1	0.9228
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030904 [exp]	8.1	0.9201

Compare expression of checked genes

Lus10024171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.